Evidence map›Paper›PMID 35202087›Full record

ArticleNon-coding RNA2022

FibroDB: Expression Analysis of Protein-Coding and Long Non-Coding RNA Genes in Fibrosis.

Mirolyuba Ilieva, Henry E Miller, Arav Agarwal, Gabriela K Paulus, Jens Hedelund Madsen, Alexander J R Bishop, Sakari Kauppinen, Shizuka Uchida

Open access · goldAbstract read
In one paragraph

Article in Non-coding RNA, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Mirolyuba IlievaCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, DK-2450 Copenhagen, Denmark.ORCID 0000-0002-7992-8885
Henry E MillerDepartment of Cell Systems and Anatomy, UT Health San Antonio, San Antonio, TX 78229, USA.ORCID 0000-0003-3756-3918
Arav AgarwalBioinformatics Research Network, Atlanta, GA 30317, USA.
Gabriela K PaulusBioinformatics Research Network, Atlanta, GA 30317, USA.
Jens Hedelund MadsenCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, DK-2450 Copenhagen, Denmark.
Alexander J R BishopDepartment of Cell Systems and Anatomy, UT Health San Antonio, San Antonio, TX 78229, USA.ORCID 0000-0002-5742-4387
Sakari KauppinenCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, DK-2450 Copenhagen, Denmark.
Shizuka UchidaCenter for RNA Medicine, Department of Clinical Medicine, Aalborg University, DK-2450 Copenhagen, Denmark.ORCID 0000-0003-4787-8067
Aalborg University · DKResearch Network (United States) · USThe University of Texas Health Science Center at San Antonio · US

Funding

Dysregulated transcription processes in Ewing sarcoma:R01CA241554 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI BISHOP, ALEXANDER JAMES · 2020 to 2025
$2.3M
Improving etoposide treatment of Ewing's sarcomaR01CA152063 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI BISHOP, ALEXANDER JAMES · 2011 to 2015
$1.5M
The dynamics and impact of R-loops in epigenetic stability and agingF31AG072902 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI MILLER, HENRY · 2021 to 2022
$41k
NCI NIH HHS R01 CA152063NCI NIH HHS R01 CA241554NIA NIH HHS F31 AG072902
6 · The paper itself

Abstract

Most long non-coding RNAs (lncRNAs) are expressed at lower levels than protein-coding genes and their expression is often restricted to specific cell types, certain time points during development, and various stress and disease conditions, respectively. To revisit this long-held concept, we focused on fibroblasts, a common cell type in various organs and tissues. Using fibroblasts and changes in their expression profiles during fibrosis as a model system, we show that the overall expression level of lncRNA genes is significantly lower than that of protein-coding genes. Furthermore, we identified lncRNA genes whose expression is upregulated during fibrosis. Using dermal fibroblasts as a model, we performed loss-of-function experiments and show that the knockdown of the lncRNAs

Indexed as

fibroblastfibrosisgene expressionlncRNARNA-seq

Identifiers

PMID35202087
PMCPMC8877069
OpenAlexW4214515540

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.