Evidence map›Paper›PMID 35201897›Full record

ArticleJournal of virology2022

Plasma-Derived HIV-1 Virions Contain Considerable Levels of Defective Genomes.

Katie Fisher, Xiao Qian Wang, Ashley Lee, Vincent Morcilla, Anneke de Vries, Eunok Lee, John-Sebastian Eden, Steven G Deeks, Anthony D Kelleher, Sarah Palmer

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 30 citations in OpenAlex.

  1. Trial
  2. Article
  3. Immortalization and Targeted Enrichment of HIV-Infected CD4International journal of molecular sciences · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. HIV-1 control in vivo is related to the number but not the fraction of infected cells with viral unspliced RNA.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Article
  10. Article
  11. Article
  12. Observational
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Full-spectrum HIV drug resistance mutation detection by high-resolution complete pol gene sequencing.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Katie FisherCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.ORCID 0000-0002-8732-706X
Xiao Qian WangCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.
Ashley LeeCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.
Vincent MorcillaCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.
Anneke de VriesCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.
Eunok LeeCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.ORCID 0000-0002-5528-3859
John-Sebastian EdenCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.ORCID 0000-0003-1374-3551
Steven G DeeksDivision of HIV, Infectious Diseases and Global Medicine, Department of Medicine, Zuckerberg San Francisco General Hospital, University of California San Francisco, San Francisco, California, USA.
Anthony D KelleherKirby Institute, The University of New South Wales, Sydney, New South Wales, Australia.
Sarah PalmerCentre for Virus Research, The Westmead Institute of Medical Research, The University of Sydneygrid.1013.3, Sydney, New South Wales, Australia.
The University of Sydney · AUSan Francisco General Hospital · USUNSW Sydney · AU

Funding

Delaney AIDS Research Enterprise to Cure HIVUM1AI164560 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS, Sharon Ruth Lewin · 2021 to 2026
$32.0M
Delaney AIDS Research Enterprise to Cure HIVUM1AI126611 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT, PICKER, LOUIS J. · 2016 to 2020
$27.9M
NIAID NIH HHS UM1 AI126611NIAID NIH HHS UM1 AI164560
6 · The paper itself

Abstract

Genetically-characterizing full-length HIV-1 RNA is critical for identifying genetically-intact genomes and for comparing these RNA genomes to proviral DNA. We have developed a method for sequencing plasma-derived RNA using long-range sequencing (PRLS assay; ∼8.3 kb from

Indexed as

Genome, ViralHIV-1HIV SeropositivityAnti-Retroviral AgentsHumansLeukocytes, MononuclearProvirusesRNA, ViralVirionAnti-Retroviral AgentsRNA, Viralhuman immunodeficiency virus

Identifiers

PMID35201897
PMCPMC8941922
OpenAlexW4213420264

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.