Evidence map›Paper›PMID 35200383›Full record

ArticleBiosensors2022

A Recombinase-Based Genetic Circuit for Heavy Metal Monitoring.

Doğuş Akboğa, Behide Saltepe, Eray Ulaş Bozkurt, Urartu Özgür Şafak Şeker

Open access · goldAbstract read
In one paragraph

Article in Biosensors, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Living Microbial Drugs.Chemistry (Weinheim an der Bergstrasse, Germany) · 2026
    Review
  3. Tunable low-rate genomic recombination with Cre-Applied and environmental microbiology · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. A Genetic Circuit Design for Targeted Viral RNA Degradation.Bioengineering (Basel, Switzerland) · 2023
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Doğuş AkboğaUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey.ORCID 0000-0002-0426-6135
Behide SaltepeUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey.
Eray Ulaş BozkurtUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey.
Urartu Özgür Şafak ŞekerUNAM-Institute of Materials Science and Nanotechnology, Bilkent University, Ankara 06800, Turkey.
Bilkent University · TR

Funding

Scientific and Technological Research Council of Turkey 118S398
6 · The paper itself

Abstract

Rapid progress in the genetic circuit design enabled whole-cell biosensors (WCBs) to become prominent in detecting an extensive range of analytes with promise in many fields, from medical diagnostics to environmental toxicity assessment. However, several drawbacks, such as high background signal or low precision, limit WCBs to transfer from proof-of-concept studies to real-world applications, particularly for heavy metal toxicity monitoring. For an alternative WCB module design, we utilized Bxb1 recombinase that provides tight control as a switch to increase dose-response behavior concerning leakiness. The modularity of Bxb1 recombinase recognition elements allowed us to combine an engineered semi-specific heat shock response (HSR) promoter, sensitive to stress conditions including toxic ions such as cadmium, with cadmium resistance regulatory elements; a cadmium-responsive transcription factor and its cognitive promoter. We optimized the conditions for the recombinase-based cadmium biosensor to obtain increased fold change and shorter response time. This system can be expanded for various heavy metals to make an all-in-one type of WCB, even using semi-specific parts of a sensing system.

Indexed as

Biosensing TechniquesMetals, HeavyCadmiumPromoter Regions, GeneticRecombinasesCadmiumMetals, HeavyRecombinasesBxb1 recombinaseheavy metal detectionsynthetic biologytoxicitywhole-cell biosensor

Identifiers

PMID35200383
PMCPMC8870050
OpenAlexW4213168385

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.