Evidence map›Paper›PMID 35199641›Full record

ArticleeLife2022

Creation of photocyclic vertebrate rhodopsin by single amino acid substitution.

Kazumi Sakai, Yoshinori Shichida, Yasushi Imamoto, Takahiro Yamashita

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Welcome to the borderless rhodopsin world.Biophysics and physicobiology · 2023
    Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kazumi SakaiDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID 0000-0001-6631-8546
Yoshinori ShichidaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.
Yasushi ImamotoDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID 0000-0002-0803-4163
Takahiro YamashitaDepartment of Biophysics, Graduate School of Science, Kyoto University, Kyoto, Japan.ORCID 0000-0002-7956-9288
Kyoto University · JPRitsumeikan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Opsins are universal photoreceptive proteins in animals and can be classified into three types based on their photoreaction properties. Upon light irradiation, vertebrate rhodopsin forms a metastable active state, which cannot revert back to the original dark state via either photoreaction or thermal reaction. By contrast, after photoreception, most opsins form a stable active state which can photoconvert back to the dark state. Moreover, we recently found a novel type of opsins whose activity is regulated by photocycling. However, the molecular mechanism underlying this diversification of opsins remains unknown. In this study, we showed that vertebrate rhodopsin acquired the photocyclic and photoreversible properties upon introduction of a single mutation at position 188. This revealed that the residue at position 188 contributes to the diversification of photoreaction properties of opsins by its regulation of the recovery from the active state to the original dark state.

Indexed as

Amino Acid SubstitutionAmino Acid SequenceAnimalsCattleLightMutationOpsinsRhodopsinVertebratesOpsinsRhodopsinbiochemistrychemical biologyG protein-coupled receptormolecular biophysicsretinalrhodopsinstructural biology

Identifiers

PMID35199641
PMCPMC8871353
OpenAlexW4221096970

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.