Evidence map›Paper›PMID 35199315›Full record

ArticleCell stress & chaperones2022

Unraveling of interacting protein network of chaperonin TCP1 gamma subunit of Leishmania donovani.

Shailendra Yadav, Apeksha Anand, Karthik Ramalingam, Deep Chandra Balodi, Jaswinder Singh Maras, Neena Goyal

Open access · greenAbstract read
In one paragraph

Article in Cell stress & chaperones, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shailendra YadavDivision of Biochemistry and Structural Biology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Apeksha AnandDivision of Biochemistry and Structural Biology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Karthik RamalingamDivision of Biochemistry and Structural Biology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Deep Chandra BalodiDivision of Biochemistry and Structural Biology, CSIR-Central Drug Research Institute, Lucknow, 226031, India.
Jaswinder Singh MarasDepartment of Molecular and Cellular Medicine, Institute of Liver and Biliary Sciences, New Delhi, 110070, India.
Neena GoyalDivision of Biochemistry and Structural Biology, CSIR-Central Drug Research Institute, Lucknow, 226031, India. neenacdri@yahoo.com.ORCID 0000-0003-2544-3185
Central Drug Research Institute · INInstitute of Liver and Biliary Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-complex polypeptide-1 (TCP1) is a group II chaperonin that folds various cellular proteins. About 10% of cytosolic proteins in yeast have been shown to flux through the TCP1 protein complex indicating that it interacts and folds a plethora of substrate proteins that perform essential functions. In Leishmania donovani, the gamma subunit of TCP1 (LdTCP1γ) has been shown to form a homo-oligomeric complex and exhibited ATP-dependent protein folding activity. LdTCP1γ is essential for the growth and infectivity of the parasite. The interacting partners of L. donovani TCP1γ, involved in many cellular processes, are far from being understood. In this study, we utilized co-immunoprecipitation assay coupled with liquid chromatography-mass spectrometry (LC-MS) to unravel protein-protein interaction (PPI) networks of LdTCP1γ in the L. donovani parasite. Label-free quantification (LFQ) proteomic analysis revealed 719 interacting partners of LdTCP1γ. String analysis showed that LdTCP1γ interacts with all subunits of TCP1 complex as well as other proteins belonging to pathways like metabolic process, ribosome, protein folding, sorting, and degradation. Trypanothione reductase, identified as one of the interacting partners, is refolded by LdTCP1γ. In addition, the differential expression of LdTCP1γ modulates the trypanothione reductase activity in L. donovani parasite. The study provides novel insight into the role of LdTCP1γ that will pave the way to better understand parasite biology by identifying the interacting partners of this chaperonin.

Indexed as

Leishmania donovaniChaperonin Containing TCP-1Protein FoldingProteomicsRibosomesChaperonin Containing TCP-1Heat shock proteinInteracting partnersLC–MS/MSLeishmania donovaniRefoldingT-complex protein-1 gamma subunit

Identifiers

PMID35199315
PMCPMC9106790
OpenAlexW4213367988

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.