Evidence map›Paper›PMID 35198642›Full record

ArticleOpen forum infectious diseases2022

Detection of Rift Valley Fever Virus Lineage H From South Africa Through the Syndromic Sentinel Surveillance Network in Senegal.

Ndeye Sakha Bob, Mamadou Aliou Barry, Moussa Moise Diagne, Martin Faye, Marie Henriette Dior Ndione, Amadou Diallo, Mamadou Diop, Boly Diop, Oumar Faye, Cheikh Loucoubar and 2 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Ndeye Sakha BobPole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Mamadou Aliou BarryEpidemiology, Clinical Research & Data Science, Institut Pasteur of Dakar, Dakar, Senegal.
Moussa Moise DiagnePole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Martin FayePole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Marie Henriette Dior NdionePole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Amadou DialloEpidemiology, Clinical Research & Data Science, Institut Pasteur of Dakar, Dakar, Senegal.
Mamadou DiopEpidemiology, Clinical Research & Data Science, Institut Pasteur of Dakar, Dakar, Senegal.
Boly DiopMinistry of Health, Dakar, Senegal.
Oumar FayePole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Cheikh LoucoubarEpidemiology, Clinical Research & Data Science, Institut Pasteur of Dakar, Dakar, Senegal.
Gamou FallPole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Ousmane FayePole of Virology, Institut Pasteur of Dakar, Dakar, Senegal.
Institut Pasteur de Dakar · SN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRift Valley fever virus (RVFV) is an arbovirus that causes epizootics and epidemics among livestock population and humans. Our surveillance system has revealed multiple emergences and re-emergences of RVFV in West Africa over the last decade.

methodsThe Sentinel Syndromic Surveillance Network in Senegal (4S) has been implemented since 2011. Samples from human suspected arbovirus infection in 4S sentinel sites were sent to Institut Pasteur de Dakar (IPD), where arbovirus diagnosis by enzyme-linked immunosorbent assay (ELISA), real-time reverse transcription polymerase chain reaction (RT-PCR), and virus isolation was performed. Overall, IPD has received a total of 1149 samples from arboviral suspected patients through the 4S network from January to December 2020. These samples were screened for 7 arboviruses including RVFV. Whole-genome sequencing of positive RVFV samples by RT-PCR was performed using the Illumina Miseq platform followed by genome assembly. Phylogenetic analyses were performed using MEGA X.

resultsOut of the 1149 arbovirus suspected cases, 4 RVFV-positive samples were detected with RT-PCR while 5 RVFV-positive samples were detected by ELISA. Complete genome sequences were obtained for 3 strains among the 4 positive samples by RT-PCR. Phylogenetic analyses indicated an emergence of a virus first described in South Africa during a major outbreak.

conclusionsThis strong surveillance system allowed the detection of an RVFV outbreak in Senegal in 2020. The obtained genomes clustered with strains from South Africa belonging to lineage H. This calls for implementation of a strong surveillance system for wild animals, humans, and livestock simultaneously in all African countries.

Indexed as

genetic diversityRift Valley fever virusSenegalsurveillance

Identifiers

PMID35198642
PMCPMC8860161
OpenAlexW4200043028

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.