Evidence map›Paper›PMID 35197973›Full record

ArticleFrontiers in immunology2022

GlycoFibroTyper: A Novel Method for the Glycan Analysis of IgG and the Development of a Biomarker Signature of Liver Fibrosis.

Danielle A Scott, Mengjun Wang, Stephane Grauzam, Sarah Pippin, Alyson Black, Peggi M Angel, Richard R Drake, Stephen Castellino, Yuko Kono, Don C Rockey and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 21 citations in OpenAlex.

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  7. Prospective on Imaging Mass Spectrometry in Clinical Diagnostics.Molecular & cellular proteomics : MCP · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Danielle A ScottGlycopath, Inc., Charleston, SC, United States.
Mengjun WangDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Stephane GrauzamDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Sarah PippinGlycopath, Inc., Charleston, SC, United States.
Alyson BlackDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Peggi M AngelDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Richard R DrakeDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Stephen CastellinoGlycopath, Inc., Charleston, SC, United States.
Yuko KonoDepartment of Medicine, Gastroenterology and Hepatology, University of California San Diego, San Diego, CA, United States.
Don C RockeyDigestive Disease Research Center, Medical University of South Carolina, Charleston, SC, United States.
Anand S MehtaDepartment of Cell and Molecular Pharmacology & Experimental Therapeutics, Medical University of South Carolina, Charleston, SC, United States.
Medical University of South Carolina · USUniversity of California, San Diego · US

Funding

Proteomics CoreP30DK123704 · NIDDK · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI Garth R Swanson · 2020 to 2026
$8.8M
Glycopathology of HCC: identification of the source cells of serum fucosylationU01CA226052 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI DRAKE, RICHARD R., HOSHIDA, YUJIN · 2019 to 2023
$2.8M
Translation of a biomarker panel for the early detection of hepatocellular carcinomaR01CA237659 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MARRERO, JORGE A, MEHTA, ANAND S. · 2019 to 2023
$2.5M
Simplified Glycan Profiling Workflows of Captured Immune Glycoproteins and CellsU01CA242096 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ANGEL, PEGGI M, DRAKE, RICHARD R. · 2019 to 2021
$818k
Development of the GlycoFibrotyper for detection of liver fibrosisR41DK124058 · NIDDK · GLYCOPATH, INC · PI MEHTA, ANAND S., SCOTT, DANIELLE · 2019 to 2019
$223k
NCI NIH HHS R01 CA237659NCI NIH HHS U01 CA226052NCI NIH HHS U01 CA242096NIDDK NIH HHS P30 DK123704NIDDK NIH HHS R41 DK124058
6 · The paper itself

Abstract

Our group has recently developed the GlycoTyper assay which is a streamlined antibody capture slide array approach to directly profile N-glycans of captured serum glycoproteins including immunoglobulin G (IgG). This method needs only a few microliters of serum and utilizes a simplified processing protocol that requires no purification or sugar modifications prior to analysis. In this method, antibody captured glycoproteins are treated with peptide N-glycosidase F (PNGase F) to release N-glycans for detection by MALDI imaging mass spectrometry (IMS). As alterations in N-linked glycans have been reported for IgG from large patient cohorts with fibrosis and cirrhosis, we utilized this novel method to examine the glycosylation of total IgG, as well as IgG1, IgG2, IgG3 and IgG4, which have never been examined before, in a cohort of 106 patients with biopsy confirmed liver fibrosis. Patients were classified as either having no evidence of fibrosis (41 patients with no liver disease or stage 0 fibrosis), early stage fibrosis (10 METAVIR stage 1 and 18 METAVIR stage 2) or late stage fibrosis (6 patients with METAVIR stage 3 fibrosis and 37 patients with METAVIR stage 4 fibrosis (cirrhosis)). Several major alterations in glycosylation were observed that classify patients as having no fibrosis (sensitivity of 92% and a specificity of 90%), early fibrosis (sensitivity of 84% with 90% specificity) or significant fibrosis (sensitivity of 94% with 90% specificity).

Indexed as

BiomarkersFemaleGlycoproteinsGlycosylationHumansImmunoglobulin GLiver CirrhosisMaleMiddle AgedPolysaccharidesResearch DesignSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBiomarkersGlycoproteinsImmunoglobulin GPolysaccharidesbiomarkercirrhosisfibrosisglycosylationimmunoglobulin

Identifiers

PMID35197973
PMCPMC8858972
OpenAlexW4210729233

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.