Evidence map›Paper›PMID 35197475›Full record

ArticleNature communications2022

Integrative molecular and clinical profiling of acral melanoma links focal amplification of 22q11.21 to metastasis.

Farshad Farshidfar, Kahn Rhrissorrakrai, Chaya Levovitz, Cong Peng, James Knight, Antonella Bacchiocchi, Juan Su, Mingzhu Yin, Mario Sznol, Stephan Ariyan and 15 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. SPP1Cell death & disease · 2026
    Article
  4. Article
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  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Ancestry and somatic profile predict acral melanoma origin and prognosis.medRxiv : the preprint server for health sciences · 2025
    Article
  13. Article
  14. Single-Cell Transcriptomic Landscape Deciphers Intratumoral Heterogeneity and Subtypes of Acral and Mucosal Melanomas.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  15. Review
  16. Article
  17. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 3 countries.

Farshad Farshidfar *Institute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3674-7336
Kahn Rhrissorrakrai *IBM Research, Yorktown Heights, NY, USA.
Chaya Levovitz *IBM Research, Yorktown Heights, NY, USA.ORCID http://orcid.org/0000-0002-9251-2294
Cong Peng *Xiangya Hospital, Central South University, Changsha, China.
James KnightYale Center for Genome Analysis, Yale University, New Haven, CT, 06520, USA.ORCID http://orcid.org/0000-0003-1166-0437
Antonella BacchiocchiDepartment of Dermatology, Yale University School of Medicine, New Haven, CT, USA.
Juan SuXiangya Hospital, Central South University, Changsha, China.
Mingzhu YinXiangya Hospital, Central South University, Changsha, China.ORCID http://orcid.org/0000-0002-6964-7131
Mario SznolDepartment of Internal Medicine, Section of Medical Oncology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4137-9662
Stephan AriyanDepartment of Surgery, Yale University School of Medicine, New Haven, CT, USA.
James CluneDepartment of Surgery, Yale University School of Medicine, New Haven, CT, USA.
Kelly OlinoDepartment of Surgery, Yale University School of Medicine, New Haven, CT, USA.
Laxmi ParidaIBM Research, Yorktown Heights, NY, USA.ORCID http://orcid.org/0000-0002-7872-5074
Joerg NikolausDepartment of Molecular and Cellular Physiology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-5535-6942
Meiling ZhangDepartment of Pathology, Yale University School of Medicine, New Haven, CT, USA.
Shuang ZhaoXiangya Hospital, Central South University, Changsha, China.
Yan WangDepartment of Dermatologic Surgery Institute of Dermatology, Chinese Academy of Medical Sciences & Peking Union Medical College, Nanjing, China.
Gang HuangDepartment of Bone and Soft Tissue oncology, Hunan Cancer Hospital, Affiliated Tumor Hospital of Xiangya Medical School of Central South University, Changsha, Hunan, China.
Miaojian WanDepartment of Dermatology, The Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, China.
Xianan LiDepartment of Bone and Soft Tissue oncology, Hunan Cancer Hospital, Affiliated Tumor Hospital of Xiangya Medical School of Central South University, Changsha, Hunan, China.
Jian CaoDepartment of Pathology, Yale University School of Medicine, New Haven, CT, USA.
Qin YanDepartment of Pathology, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-4077-453X
Xiang ChenXiangya Hospital, Central South University, Changsha, China. chenxiangck@126.com.ORCID http://orcid.org/0000-0001-8187-636X
Aaron M NewmanInstitute for Stem Cell Biology and Regenerative Medicine, Stanford University, Stanford, CA, USA. amnewman@stanford.edu.ORCID http://orcid.org/0000-0002-1857-8172
Ruth HalabanDepartment of Dermatology, Yale University School of Medicine, New Haven, CT, USA. ruth.halaban@yale.edu.ORCID http://orcid.org/0000-0001-8451-1964
Yale University · USCentral South University · CNIBM (United States) · USCalifornia Institute for Regenerative Medicine · USChinese Academy of Medical Sciences & Peking Union Medical College · CNSun Yat-sen University · CN

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
TRANSCRIPTIONAL PROFILINGP30CA072720 · NCI · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI Elisa Victoria Bandera · 1997 to 2026
$94.5M
Yale SPORE in Skin CancerP50CA121974 · NCI · YALE UNIVERSITY · PI DAVID F STERN · 2006 to 2026
$43.9M
YALE CANCER CENTER CALABRESI IMMUNO-ONCOLOGY TRAINING PROGRAMK12CA215110 · NCI · YALE UNIVERSITY · PI Harriet M. Kluger · 2018 to 2026
$6.1M
Ultrasensitive Quantitation of Circulating Tumor DNAR00CA187192 · NCI · STANFORD UNIVERSITY · PI NEWMAN, AARON M · 2017 to 2019
$747k
NCATS NIH HHS UL1 TR001863NCI NIH HHS K12 CA215110NCI NIH HHS P30 CA072720NCI NIH HHS P50 CA121974NCI NIH HHS R00 CA187192
6 · The paper itself

Abstract

Acral melanoma, the most common melanoma subtype among non-White individuals, is associated with poor prognosis. However, its key molecular drivers remain obscure. Here, we perform integrative genomic and clinical profiling of acral melanomas from 104 patients treated in North America (n = 37) or China (n = 67). We find that recurrent, late-arising focal amplifications of cytoband 22q11.21 are a leading determinant of inferior survival, strongly associated with metastasis, and linked to downregulation of immunomodulatory genes associated with response to immune checkpoint blockade. Unexpectedly, LZTR1 - a known tumor suppressor in other cancers - is a key candidate oncogene in this cytoband. Silencing of LZTR1 in melanoma cell lines causes apoptotic cell death independent of major hotspot mutations or melanoma subtypes. Conversely, overexpression of LZTR1 in normal human melanocytes initiates processes associated with metastasis, including anchorage-independent growth, formation of spheroids, and an increase in MAPK and SRC activities. Our results provide insights into the etiology of acral melanoma and implicate LZTR1 as a key tumor promoter and therapeutic target.

Indexed as

MelanomaSkin NeoplasmsCutaneous Malignant MelanomaGenomicsHumansOncogenesTranscription FactorsLZTR1 protein, humanTranscription Factors

Identifiers

PMID35197475
PMCPMC8866401
OpenAlexW4214648237

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.