Evidence map›Paper›PMID 35197289›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Conformational alterations in unidirectional ion transport of a light-driven chloride pump revealed using X-ray free electron lasers.

Toshiaki Hosaka, Takashi Nomura, Minoru Kubo, Takanori Nakane, Luo Fangjia, Shun-Ichi Sekine, Takuhiro Ito, Kazutaka Murayama, Kentaro Ihara, Haruhiko Ehara and 19 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

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  8. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 6 institutions in 1 country.

Toshiaki HosakaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-7652-8114
Takashi NomuraRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.ORCID 0000-0002-4613-7403
Minoru KuboDepartment of Life Science, Graduate School of Science, University of Hyogo, Hyogo 678-1297, Japan.ORCID 0000-0002-1470-942X
Takanori NakaneDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-0034, Japan.
Luo FangjiaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Shun-Ichi SekineRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0001-8174-8704
Takuhiro ItoRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0003-3704-5205
Kazutaka MurayamaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0003-1749-4038
Kentaro IharaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Haruhiko EharaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0002-7420-145X
Kazuhiro KashiwagiRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Kazushige KatsuraRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Ryogo AkasakaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Tamao HisanoRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.
Tomoyuki TanakaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Rie TanakaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Toshi ArimaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Ayumi YamashitaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Michihiro SugaharaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Hisashi NaitowRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Yoshinori MatsuuraRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Susumu YoshizawaAtmosphere and Ocean Research Institute, The University of Tokyo, Chiba 277-8564, Japan.
Kensuke TonoRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.ORCID 0000-0003-1218-3759
Shigeki OwadaRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.ORCID 0000-0002-1451-7612
Osamu NurekiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo 113-0034, Japan.ORCID 0000-0003-1813-7008
Tomomi Kimura-SomeyaRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0003-2232-1801
So IwataRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Eriko NangoRIKEN SPring-8 Center, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan; mikako.shirouzu@riken.jp eriko.nango.c4@tohoku.ac.jp.ORCID 0000-0001-9851-7355
Mikako ShirouzuRIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa 230-0045, Japan; mikako.shirouzu@riken.jp eriko.nango.c4@tohoku.ac.jp.
RIKEN Center for Biosystems Dynamics Research · JPKyoto University · JPSPring-8 · JPThe University of Tokyo · JPTohoku University · JPUniversity of Hyogo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Light-driven chloride-pumping rhodopsins actively transport anions, including various halide ions, across cell membranes. Recent studies using time-resolved serial femtosecond crystallography (TR-SFX) have uncovered the structural changes and ion transfer mechanisms in light-driven cation-pumping rhodopsins. However, the mechanism by which the conformational changes pump an anion to achieve unidirectional ion transport, from the extracellular side to the cytoplasmic side, in anion-pumping rhodopsins remains enigmatic. We have collected TR-SFX data of

Indexed as

LasersChloride ChannelsCrystallographyCytoplasmIon TransportLightProtein ConformationX-RaysChloride Channelschloride ion pumpmicrobial rhodopsinserial femtosecond crystallography

Identifiers

PMID35197289
PMCPMC8892520
OpenAlexW4213450711

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.