Evidence map›Paper›PMID 35196804›Full record

ArticleMicrobiology spectrum2022

Genome-Wide CRISPR-Cas9 Screen Does Not Identify Host Factors Modulating Streptococcus agalactiae β-Hemolysin/Cytolysin-Induced Cell Death.

Ifrah Shahi, Cristina N Llaneras, Sofya S Perelman, Victor J Torres, Adam J Ratner

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
  3. ThemBio · 2024
    Article
  4. Recent Advances in Bacterial Persistence Mechanisms.International journal of molecular sciences · 2023
    Review
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ifrah ShahiDepartment of Microbiology, New York University Grossman School of Medicine, New York, New York, USA.
Cristina N LlanerasDepartment of Microbiology, New York University Grossman School of Medicine, New York, New York, USA.
Sofya S PerelmanDepartment of Microbiology, New York University Grossman School of Medicine, New York, New York, USA.
Victor J TorresDepartment of Microbiology, New York University Grossman School of Medicine, New York, New York, USA.
Adam J RatnerDepartment of Microbiology, New York University Grossman School of Medicine, New York, New York, USA.ORCID 0000-0003-1761-794X
New York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
Mechanistic Studies Of The Staphylococcus aureus LukAB CytotoxinR01AI099394 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Victor J. Torres · 2013 to 2026
$6.1M
Redefining the role of autophagy in bacterial diseaseR01AI121244 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 2017 to 2026
$5.6M
Contribution of LukED to Staphylococcus aureus pathobiologyR01AI105129 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI TORRES, VICTOR J. · 2014 to 2023
$4.9M
Spatiotemporal analysis of gene regulatory programs associated with GBS infection during pregnancyR01AI143290 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RATNER, ADAM JONATHAN, YANAI, ITAI · 2019 to 2023
$3.8M
Capsular serotype in group B Streptococcus colonization and diseaseR01AI155476 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI RATNER, ADAM JONATHAN · 2021 to 2025
$3.5M
Genome-wide assessment of Group B Streptococcus fitness and virulenceR21AI147511 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI HOOVEN, THOMAS A, RATNER, ADAM JONATHAN · 2020 to 2021
$489k
NCI NIH HHS P30 CA016087NIAID NIH HHS R01 AI099394NIAID NIH HHS R01 AI105129NIAID NIH HHS R01 AI121244NIAID NIH HHS R01 AI143290NIAID NIH HHS R01 AI155476NIAID NIH HHS R21 AI147511
6 · The paper itself

Abstract

Pore-forming toxins (PFTs) are commonly produced by pathogenic bacteria, and understanding them is key to the development of virulence-targeted therapies. Streptococcus agalactiae, or group B Streptococcus (GBS), produces several factors that enhance its pathogenicity, including the PFT β-hemolysin/cytolysin (βhc). Little is understood about the cellular factors involved in βhc pore formation. We conducted a whole-genome CRISPR-Cas9 forward genetic screen to identify host genes that might contribute to βhc pore formation and cell death. While the screen identified the established receptor, CD59, in control experiments using the toxin intermedilysin (ILY), no clear candidate genes were identified that were required for βhc-mediated lethality. Of the top targets from the screen, two genes involved in membrane remodeling and repair represented candidates that might modulate the kinetics of βhc-induced cell death. Upon attempted validation of the results using monoclonal cell lines with targeted disruption of these genes, no effect on βhc-mediated cell lysis was observed. The CRISPR-Cas9 screen results are consistent with the hypothesis that βhc does not require a single nonessential host factor to mediate target cell death.

Indexed as

CD59 AntigensCell DeathCell LineCRISPR-Cas SystemsGenome, BacterialHemolysin ProteinsHost-Pathogen InteractionsHumansPerforinStreptococcal InfectionsStreptococcus agalactiaeCD59 AntigensHemolysin ProteinsPerforincytolysingroup B Streptococcusintermedilysin

Identifiers

PMID35196804
PMCPMC8865549
OpenAlexW4213425773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.