Evidence map›Paper›PMID 35195841›Full record

ArticleFunctional & integrative genomics2022

Unravelling the treasure trove of drought-responsive genes in wild-type peanut through transcriptomics and physiological analyses of root.

Feba Jacob Thoppurathu, Zahra Ghorbanzadeh, Ashish Kumar Vala, Rasmieh Hamid, Meera Joshi

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In one paragraph

Article in Functional & integrative genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Feba Jacob ThoppurathuCentre for Plant Biotechnology and Molecular Biology, Kerala Agricultural University, Thrissur, India.
Zahra GhorbanzadehDepartment of Systems BiologyABRIIAgricultural Research Education and Extension Organization (AREEO), Agricultural Biotechnology Research Institute of Iran, Karaj, Iran.
Ashish Kumar ValaDepartment of Biotechnology, Junagadh Agricultural University, Junagadh, India.
Rasmieh HamidDepartment of Plant Breeding, Agricultural Research, Education and Extension Organization (AREEO), Cotton Research Institutes of Iran (CRII), Gorgan, Iran. rasihamid@gmail.com.ORCID http://orcid.org/0000-0001-5685-9744
Meera JoshiDepartment of Biotechnology, Junagadh Agricultural University, Junagadh, India.
Agricultural Research & Education Organization · IRJunagadh Agricultural University · INKerala Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peanut is one of the most valuable legumes, grown mainly in arid and semi-arid regions, where its production may be hindered by the lack of water. Therefore, breeding drought tolerant varieties is of great importance for peanut breeding programs around the world. Unlike cultivated peanuts, wild peanuts have greater genetic diversity and are an important source of alleles conferring tolerance/resistance to abiotic and biotic stresses. To decipher the transcriptome changes under drought stress, transcriptomics of roots of highly tolerant Arachis duranensis (ADU) and moderately susceptible A. stenosperma (AST) genotypes were performed. Transcriptome analysis revealed an aggregate of 1465 differentially expressed genes (DEGs), and among the identified DEGs, there were 366 single nucleotide polymorphisms (SNPs). Gene ontology and Mapman analyses revealed that the ADU genotype had a higher number of transcripts related to DNA methylation or demethylation, phytohormone signal transduction and flavonoid production, transcription factors, and responses to ethylene. The transcriptome analysis was endorsed by qRT-PCR, which showed a strong correlation value (R

Indexed as

DroughtsFabaceaeArachisGene Expression ProfilingGene Expression Regulation, PlantPlant BreedingStress, PhysiologicalTranscriptomeDrought stressPeanut wild relativesqRT-PCRRNA-seqRoots

Identifiers

PMID35195841
OpenAlexW4213298419

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.