Evidence map›Paper›PMID 35194151›Full record

ArticleOncogene2022

Induction of APOBEC3-mediated genomic damage in urothelium implicates BK polyomavirus (BKPyV) as a hit-and-run driver for bladder cancer.

Simon C Baker, Andrew S Mason, Raphael G Slip, Katie T Skinner, Andrew Macdonald, Omar Masood, Reuben S Harris, Tim R Fenton, Manikandan Periyasamy, Simak Ali and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Oncogene, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
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  14. Clinical Implications of APOBEC3-Mediated Mutagenesis in Breast Cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Simon C BakerJack Birch Unit for Molecular Carcinogenesis, Department of Biology and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK. simon.baker@york.ac.uk.ORCID http://orcid.org/0000-0002-2755-6012
Andrew S MasonJack Birch Unit for Molecular Carcinogenesis, Department of Biology and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK.ORCID http://orcid.org/0000-0002-8222-3974
Raphael G SlipJack Birch Unit for Molecular Carcinogenesis, Department of Biology and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK.ORCID http://orcid.org/0000-0002-5218-2251
Katie T SkinnerJack Birch Unit for Molecular Carcinogenesis, Department of Biology and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK.
Andrew MacdonaldFaculty of Biological Sciences, School of Molecular and Cellular Pathology, University of Leeds, Leeds, UK.ORCID http://orcid.org/0000-0002-5978-4693
Omar MasoodLeeds Kidney Unit, St James's University Hospital, Leeds, UK.
Reuben S HarrisCollege of Biological Sciences, University of Minnesota, Minneapolis, MN, 55455, USA.ORCID http://orcid.org/0000-0002-9034-9112
Tim R FentonSchool of Biosciences, University of Kent, Canterbury, CT2 7NJ, UK.ORCID http://orcid.org/0000-0002-4737-8233
Manikandan PeriyasamyDepartment of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, UK.
Simak AliDepartment of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-1320-0816
Jennifer SouthgateJack Birch Unit for Molecular Carcinogenesis, Department of Biology and York Biomedical Research Institute, University of York, Heslington, York, YO10 5DD, UK.ORCID http://orcid.org/0000-0002-0135-480X
University of York · GBImperial College London · GBInstitute of Medical Biology · SGSt James's University Hospital · GBUniversity of Kent · GBUniversity of Leeds · GBUniversity of Minnesota · US

Funding

PROJECT 3 – BIOLOGY OF DNA DEAMINASES IN CANCERP01CA234228 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Michael Allen Carpenter · 2019 to 2026
$14.5M
NCI NIH HHS P01 CA234228
6 · The paper itself

Abstract

Limited understanding of bladder cancer aetiopathology hampers progress in reducing incidence. Mutational signatures show the anti-viral apolipoprotein B mRNA editing enzyme catalytic polypeptide (APOBEC) enzymes are responsible for the preponderance of mutations in bladder tumour genomes, but no causative viral agent has been identified. BK polyomavirus (BKPyV) is a common childhood infection that remains latent in the adult kidney, where reactivation leads to viruria. This study provides missing mechanistic evidence linking reactivated BKPyV-infection to bladder cancer risk. We used a mitotically-quiescent, functionally-differentiated model of normal human urothelium to examine BKPyV-infection. BKPyV-infection led to significantly elevated APOBEC3A and APOBEC3B protein, increased deaminase activity and greater numbers of apurinic/apyrimidinic sites in the host urothelial genome. BKPyV Large T antigen (LT-Ag) stimulated re-entry from G0 into the cell cycle through inhibition of retinoblastoma protein and activation of EZH2, E2F1 and FOXM1, with cells arresting in G2. The single-stranded DNA displacement loops formed in urothelial cells during BKPyV-infection interacted with LT-Ag to provide a substrate for APOBEC3-activity. Addition of interferon gamma (IFNγ) to infected urothelium suppressed expression of the viral genome. These results support reactivated BKPyV infections in adults as a risk factor for bladder cancer in immune-insufficient populations.

Indexed as

BK VirusPolyomavirus InfectionsUrinary Bladder NeoplasmsAdultAntigens, Viral, TumorAPOBEC DeaminasesChildCytidine DeaminaseHumansMinor Histocompatibility AntigensProteinsUrotheliumAntigens, Viral, TumorAPOBEC3A protein, humanAPOBEC3B protein, humanAPOBEC3 proteins, humanAPOBEC DeaminasesCytidine DeaminaseMinor Histocompatibility AntigensProteins

Identifiers

PMID35194151
PMCPMC8862006
OpenAlexW4213414254

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.