Evidence map›Paper›PMID 35194086›Full record

ArticleScientific reports2022

A multiparametric fluorescence assay for screening aptamer-protein interactions based on microbeads.

Carsten Schmidt, Anne Kammel, Julian A Tanner, Andrew B Kinghorn, Muhammad Moman Khan, Werner Lehmann, Marcus Menger, Uwe Schedler, Peter Schierack, Stefan Rödiger

Abstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Carsten Schmidt *Environment and Natural Sciences, Institute of Biotechnology, Brandenburg Technical University Cottbus-Senftenberg, Universitätsplatz 1, 01968, Senftenberg, Germany.
Anne Kammel *Environment and Natural Sciences, Institute of Biotechnology, Brandenburg Technical University Cottbus-Senftenberg, Universitätsplatz 1, 01968, Senftenberg, Germany.
Julian A TannerSchool of Biomedical Sciences, LKS Faculty of Medicine, The University of Hong Kong, 21 Sassoon Road, Pokfulam, Hong Kong.
Andrew B KinghornSchool of Biomedical Sciences, LKS Faculty of Medicine, The University of Hong Kong, 21 Sassoon Road, Pokfulam, Hong Kong.
Muhammad Moman KhanEnvironment and Natural Sciences, Institute of Biotechnology, Brandenburg Technical University Cottbus-Senftenberg, Universitätsplatz 1, 01968, Senftenberg, Germany.
Werner LehmannAttomol GmbH, Schulweg 6, 03205, Bronkow, Lipten, Germany.
Marcus MengerFraunhofer Institute for Cell Therapy and Immunology, Branch Bioanalytics and Bioprocesses (IZI-BB), Am Mühlenberg 13, 14476, Potsdam, Germany.
Uwe SchedlerPolyAn GmbH, Rudolf-Baschant-Straße 2, 13086, Berlin, Germany.
Peter SchierackEnvironment and Natural Sciences, Institute of Biotechnology, Brandenburg Technical University Cottbus-Senftenberg, Universitätsplatz 1, 01968, Senftenberg, Germany.
Stefan RödigerEnvironment and Natural Sciences, Institute of Biotechnology, Brandenburg Technical University Cottbus-Senftenberg, Universitätsplatz 1, 01968, Senftenberg, Germany. stefan.roediger@b-tu.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For improving aptamer-ligand binding we have developed a screening system that defines optimal binding buffer composition. Using multiplex assays, one buffer system is needed which guarantees the specific binding of all aptamers. We investigated nine peer-reviewed DNA aptamers. Non-specific binding of aptamers is an obstacle. To address this, we investigated 16 proteins as specificity controls bound covalently to encoded microbeads in a multiplex assay. Increasing the NaCl concentration decreased the binding for all aptamers. Changing pH values by one unit higher or lower did not influence the aptamer binding significantly. However, pH < 5 led to non-specific binding for all aptamers. The PfLDH-aptamer selected in the absence of divalent cations exhibited doubling of its binding signal by the addition of Ca

Indexed as

MicrospheresAptamers, NucleotideCations, DivalentFluorescenceStreptavidinAptamers, NucleotideCations, DivalentStreptavidin

Identifiers

PMID35194086
PMCPMC8863788

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.