Evidence map›Paper›PMID 35194068›Full record

ArticleScientific reports2022

Bayesian-based decipherment of in-depth information in bacterial chemical sensing beyond pleasant/unpleasant responses.

Hiroto Tanaka, Yasuaki Kazuta, Yasushi Naruse, Yukihiro Tominari, Hiroaki Umehara, Yoshiyuki Sowa, Takashi Sagawa, Kazuhiro Oiwa, Masato Okada, Ikuro Kawagishi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Hiroto TanakaAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.
Yasuaki KazutaAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.
Yasushi NaruseCenter for Information and Neural Networks (CiNet), National Institute of Information and Communications Technology and Osaka University, Kobe, Hyogo, 651-2492, Japan.
Yukihiro TominariAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.
Hiroaki UmeharaCenter for Information and Neural Networks (CiNet), National Institute of Information and Communications Technology and Osaka University, Kobe, Hyogo, 651-2492, Japan.
Yoshiyuki SowaDepartment of Frontier Bioscience and Research Center for Micro-Nano Technology, Hosei University, Tokyo, 184-8584, Japan.
Takashi SagawaAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.
Kazuhiro OiwaAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan.
Masato OkadaGraduate School of Frontier Sciences, The University of Tokyo, Kashiwa, 277-8561, Japan.
Ikuro KawagishiDepartment of Frontier Bioscience and Research Center for Micro-Nano Technology, Hosei University, Tokyo, 184-8584, Japan. ikurok@hosei.ac.jp.
Hiroaki KojimaAdvanced ICT Research Institute, National Institute of Information and Communications Technology, Kobe, Hyogo, 651-2492, Japan. kojima@nict.go.jp.
National Institute of Information and Communications Technology · JPHosei University · JPOsaka University · JPThe University of Tokyo · JPUniversity of Hyogo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chemical sensing is vital to the survival of all organisms. Bacterial chemotaxis is conducted by multiple receptors that sense chemicals to regulate a single signalling system controlling the transition between the direction (clockwise vs. counterclockwise) of flagellar rotation. Such an integrated system seems better suited to judge chemicals as either favourable or unfavourable, but not for identification purposes though differences in their affinities to the receptors may cause difference in response strength. Here, an experimental setup was developed to monitor behaviours of multiple cells stimulated simultaneously as well as a statistical framework based on Bayesian inferences. Although responses of individual cells varied substantially, ensemble averaging of the time courses seemed characteristic to attractant species, indicating we can extract information of input chemical species from responses of the bacterium. Furthermore, two similar, but distinct, beverages elicited attractant responses of cells with profiles distinguishable with the Bayesian procedure. These results provide a basis for novel bio-inspired sensors that could be used with other cell types to sense wider ranges of chemicals.

Identifiers

PMID35194068
PMCPMC8863824
OpenAlexW4213178331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.