Evidence map›Paper›PMID 35193317›Full record

ArticlePhysical review. E2022

Characterizing stochastic cell-cycle dynamics in exponential growth.

Dean Huang, Teresa Lo, Houra Merrikh, Paul A Wiggins

Abstract read
In one paragraph

Article in Physical review. E, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  6. The human cell count and size distribution.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dean HuangDepartment of Physics, University of Washington, Seattle, Washington 98195, USA.
Teresa LoDepartment of Physics, University of Washington, Seattle, Washington 98195, USA.
Houra MerrikhDepartment of Biochemistry, Vanderbilt University, Nashville, Tennessee 37205, USA.
Paul A WigginsDepartment of Physics, University of Washington, Seattle, Washington 98195, USA.

Funding

Replication resolved in the living cell: Replisome dynamics, stability and structure.R01GM128191 · NIGMS · VANDERBILT UNIVERSITY · PI MERRIKH, HOURA, WIGGINS, PAUL A · 2018 to 2021
$1.4M
NIGMS NIH HHS R01 GM128191
6 · The paper itself

Abstract

Two powerful and complementary experimental approaches are commonly used to study the cell cycle and cell biology: One class of experiments characterizes the statistics (or demographics) of an unsynchronized exponentially growing population, while the other captures cell-cycle dynamics, either by time-lapse imaging of full cell cycles or in bulk experiments on synchronized populations. In this paper, we study the subtle relationship between observations in these two distinct experimental approaches. We begin with an existing model: A single-cell deterministic description of cell-cycle dynamics where cell states (i.e., periods or phases) have precise lifetimes. We then generalize this description to a stochastic model in which the states have stochastic lifetimes, as described by arbitrary probability distribution functions. Our analyses of the demographics of an exponential culture reveal a simple and exact correspondence between the deterministic and stochastic models: The corresponding state ages in the deterministic model are equal to the exponential mean of the age in the stochastic model. An important implication is therefore that the demographics of an exponential culture will be well fit by a deterministic model even if the state timing is stochastic. Although we explore the implications of the models in the context of the Escherichia coli cell cycle, we expect both the models as well as the significance of the exponential-mean lifetimes to find many applications in the quantitative analysis of cell-cycle dynamics in other biological systems.

Identifiers

PMID35193317
PMCPMC9506121

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.