Evidence map›Paper›PMID 35192997›Full record

ArticleBiosensors & bioelectronics2022

A GMR-based assay for quantification of the human response to influenza.

Neeraja Ravi, Sarah E Chang, Luis M Franco, Sandesh C S Nagamani, Purvesh Khatri, Paul J Utz, Shan X Wang

Open access · greenAbstract read
In one paragraph

Article in Biosensors & bioelectronics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Neeraja RaviDepartment of Bioengineering, Stanford University, Stanford, CA, 93405, USA. Electronic address: neravi@stanford.edu.
Sarah E ChangInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA; Division of Immunology and Rheumatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA. Electronic address: sarahechang14@gmail.com.
Luis M FrancoFunctional Immunogenomics Unit, Systemic Autoimmunity Branch, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, MD, USA. Electronic address: luis.franco@nih.gov.
Sandesh C S NagamaniDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. Electronic address: nagamani@bcm.edu.
Purvesh KhatriDivision of Immunology and Rheumatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA; Division of Biomedical Informatics, Department of Medicine, Stanford University, Stanford, CA, USA. Electronic address: pkhatri@stanford.edu.
Paul J UtzInstitute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA; Division of Immunology and Rheumatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA. Electronic address: pjutz@stanford.edu.
Shan X WangDepartment of Materials Science and Engineering, Stanford University, Stanford, CA, USA; Department of Electrical Engineering, Stanford University, Stanford, CA, USA. Electronic address: sxwang@stanford.edu.
Stanford University · USStanford Medicine · USBaylor College of Medicine · USNational Institutes of Health · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Preclinical and Clincial OutcomesP50HD103555 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI Sandesh Chakravarthy Sreenath Nagamani, David Loren Nelson · 2020 to 2026
$9.9M
Nano Characterization and Nano Fabrication CoreU54CA199075 · NCI · STANFORD UNIVERSITY · PI SINCLAIR, ROBERT · 2015 to 2019
$9.6M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, SAMACO, RODNEY C · 2014 to 2019
$7.8M
Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
Integrative genomic analysis of the human response to glucocorticoidsZIAAR041213 · NIAMS · NATIONAL INSTITUTE OF ARTHRITIS AND MUSCULOSKELETAL AND SKIN DISEASES · PI FRANCO, LUIS · 2020 to 2025
$4.8M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH · 2014 to 2018
$3.6M
Rapid and affordable magneto-nanosensors for ctDNA-guided lung cancer managementR01CA257843 · NCI · STANFORD UNIVERSITY · PI WANG, SHAN X. · 2021 to 2024
$2.2M
NCI NIH HHS R01 CA257843NCI NIH HHS U54 CA199075NIAID NIH HHS R01 AI125197NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI110491NICHD NIH HHS P50 HD103555NICHD NIH HHS U54 HD083092
6 · The paper itself

Abstract

Detecting and quantifying the host transcriptional response to influenza virus infection can serve as a real-time diagnostic tool for clinical management. We have employed the multiplexing capabilities of GMR sensors to develop a novel assay based on the influenza metasignature (IMS), which can classify influenza infection based on transcript levels. We show that the assay can reliably detect ten IMS transcripts and distinguish subjects with naturally acquired influenza infection from those with other symptomatic viral infections (AUC 0.93, 95% CI: 0.82-1.00). Separately, we validated that the gene IFI27, not included in the IMS panel, has very high single-biomarker accuracy (AUC 0.95, 95% CI: 0.90-0.99) in stratifying patients with influenza. We demonstrate that a portable GMR biosensor can be used as a tool to diagnose influenza infection by measuring the host response, simultaneously highlighting the power of immune system metrics and advancing the field of gene expression-based diagnostics.

Indexed as

Biosensing TechniquesInfluenza, HumanOrthomyxoviridaeVirus DiseasesBiological AssayHumansGene expressionGMR sensorsHost responseInfluenzaPoint-of-care diagnostics

Identifiers

PMID35192997
PMCPMC8986584
OpenAlexW4212822064

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.