Evidence map›Paper›PMID 35192991›Full record

ArticleJournal of pharmaceutical and biomedical analysis2022

MOVER approximated CV: A tool for quantifying precision in ratiometric droplet digital PCR assays.

Christian Dide-Agossou, Karen Rossmassler, Justin Reid, Juhi Purohit, Rada M Savic, Payam Nahid, Patrick P J Phillips, Camille M Moore, Nicholas D Walter

Open access · hybridAbstract read
In one paragraph

Article in Journal of pharmaceutical and biomedical analysis, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 99% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Christian Dide-AgossouDepartment of Epidemiology, Colorado School of Public Health, Aurora, CO, USA. Electronic address: christian.dide-agossou@cuanschutz.edu.
Karen RossmasslerRocky Mountain Regional VA Medical Center, Aurora, CO, USA; Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Justin ReidRocky Mountain Regional VA Medical Center, Aurora, CO, USA; Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Juhi PurohitRocky Mountain Regional VA Medical Center, Aurora, CO, USA; Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Rada M SavicConsortium for Applied Microbial Metrics, Aurora, CO, USA; Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, CA, USA; Division of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, USA; Department of Bioengineering and Therapeutic Sciences, University of California San Francisco, San Francisco, CA, USA.
Payam NahidConsortium for Applied Microbial Metrics, Aurora, CO, USA; Division of Pulmonary and Critical Care Medicine, University of California San Francisco, San Francisco, CA, USA; Division of HIV, Infectious Diseases and Global Medicine, University of California San Francisco, San Francisco, CA, USA; UCSF Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.
Patrick P J PhillipsUCSF Center for Tuberculosis, University of California San Francisco, San Francisco, CA, USA.
Camille M MooreCenter for Genes, Environment and Health, National Jewish Health, Denver, CO, USA.
Nicholas D WalterRocky Mountain Regional VA Medical Center, Aurora, CO, USA; Division of Pulmonary Sciences and Critical Care Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA; Consortium for Applied Microbial Metrics, Aurora, CO, USA.
University of Colorado Anschutz Medical Campus · USUniversity of California, San Francisco · USColorado School of Public Health · USUniversity of California System · USUniversity of Colorado Denver · US

Funding

Sputum Transcriptomic Expression Profiling in Study 31: Express 31R01AI127300 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DAVIS, JOHN LUCIAN, NAHID, PAYAM · 2017 to 2022
$6.2M
Impact of Sterilizing and Non-sterilizing Antibiotics on M. tuberculosis rRNA SynthesisI01BX004527 · VA · VA EASTERN COLORADO HEALTH CARE SYSTEM · PI WALTER, NICHOLAS D · 2020 to 2023
–
BLRD VA I01 BX004527CSRD VA IK2 CX000914NIAID NIH HHS R01 AI127300
6 · The paper itself

Abstract

Droplet digital PCR is a particularly valuable tool for ratiometric assays because it provides simultaneous absolute quantification of two target sequences in a single assay. This manuscript addresses a challenge in establishing a new ratiometric droplet digital PCR assay for use in sputum, the rRNA synthesis ratio. In principle, the methods established to evaluate precision and determine the limit of quantification for a single measurand cannot be applied to a ratiometric assay. The precision of a ratio depends on precision in both the numerator and denominator. Here, we evaluated the MOVER approximated coefficient of variation as indicator of assay precision that does not require technical replicates. We estimated the MOVER approximated coefficient of variation in dilution series and routine assays and evaluated its agreement with the traditional coefficient of variation. We found that the MOVER approximated coefficient of variation was able to recapitulate the traditional coefficient of variation without the requirement for replicate assays. We also demonstrated that the MOVER approximated coefficient of variation threshold can be used to define the limit of quantification of the rRNA synthesis Ratio. In conclusion, the MOVER approximated coefficient of variation may be useful not only for the rRNA synthesis ratio but for other assays that measure ratios via droplet digital PCR.

Indexed as

Polymerase Chain ReactionDroplet Digital PCR AssayPrecision MeasurementQuantification LimitRatio Measurement

Identifiers

PMID35192991
PMCPMC8923918
OpenAlexW4212857648

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.