Evidence map›Paper›PMID 35192619›Full record

ArticlePLoS medicine2022

Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis.

Chongguang Yang, Benjamin Sobkowiak, Vijay Naidu, Alexandru Codreanu, Nelly Ciobanu, Kenneth S Gunasekera, Melanie H Chitwood, Sofia Alexandru, Stela Bivol, Marcus Russi and 11 more

Open access · goldAbstract read
In one paragraph

Article in PLoS medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Extensive Endemic Transmission of Multidrug-ResistantOpen forum infectious diseases · 2026
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  14. TGV: suite of tools to visualize transmission graphs.NAR genomics and bioinformatics · 2024
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  15. Approaches forAmerican journal of respiratory and critical care medicine · 2024
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  16. Reply to CohenAmerican journal of respiratory and critical care medicine · 2024
    Article
  17. Article
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  19. The Recent Transmission and Associated Risk Factor ofInfection and drug resistance · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 5 institutions in 4 countries.

Chongguang YangSchool of Public Health (Shenzhen), Shenzhen Campus of Sun Yat-sen University, Shenzhen, China.ORCID 0000-0001-8109-4974
Benjamin SobkowiakDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.ORCID 0000-0002-1382-1137
Vijay NaiduDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.ORCID 0000-0002-7398-1757
Alexandru CodreanuPhthisiopneumology Institute, Chisinau, Republic of Moldova.
Nelly CiobanuPhthisiopneumology Institute, Chisinau, Republic of Moldova.ORCID 0000-0003-1032-0617
Kenneth S GunasekeraDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0003-2098-2358
Melanie H ChitwoodDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0002-9289-5694
Sofia AlexandruPhthisiopneumology Institute, Chisinau, Republic of Moldova.
Stela BivolCenter for Health Policies and Studies, Chisinau, Republic of Moldova.ORCID 0000-0002-4711-9100
Marcus RussiDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0002-7106-068X
Joshua HavumakiDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0002-6749-1217
Patrick CudahyDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0003-4462-9567
Heather FosburghDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.
Christopher J AllenderTranslational Genomics Research Institute, Flagstaff, Arizona, United States of America.
Heather CentnerTranslational Genomics Research Institute, Flagstaff, Arizona, United States of America.ORCID 0000-0001-9537-7094
David M EngelthalerTranslational Genomics Research Institute, Flagstaff, Arizona, United States of America.ORCID 0000-0001-5945-059X
Nicolas A MenziesDepartment of Global Health and Population, and Center for Health Decision Science, Harvard TH Chan School of Public Health, Boston, Massachusetts, United States of America.ORCID 0000-0002-2571-016X
Joshua L WarrenDepartment of Biostatistics, Yale School of Public Health, New Haven, Connecticut, United States of America.
Valeriu CruduPhthisiopneumology Institute, Chisinau, Republic of Moldova.ORCID 0000-0001-5059-8002
Caroline ColijnDepartment of Mathematics, Simon Fraser University, Burnaby, Canada.ORCID 0000-0001-6097-6708
Ted CohenDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, Connecticut, United States of America.ORCID 0000-0002-8091-7198
Yale University · USPhthisiopneumology Institute "Chiril Draganiuc" · MDSimon Fraser University · CATranslational Genomics Research Institute · USSun Yat-sen University · CN

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Medical Scientist Training ProgramT32GM136651 · NIGMS · YALE UNIVERSITY · PI BARBARA I KAZMIERCZAK · 2020 to 2026
$16.5M
Multidrug-resistant tuberculosis and HIV: Composition of Strains and biomarkers of treatment responseK01TW011194 · FIC · YALE UNIVERSITY · PI CUDAHY, PATRICK GEORGE TOBIAS · 2019 to 2023
$826k
Spatial and Decision Analytic Models for Addressing Challenges in Pediatric Tuberculosis Control and CareF30HD105440 · NICHD · YALE UNIVERSITY · PI GUNASEKERA, KENNETH SURANGA · 2021 to 2022
$83k
FIC NIH HHS K01 TW011194NCATS NIH HHS UL1 TR001863NICHD NIH HHS F30 HD105440NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM136651
6 · The paper itself

Abstract

backgroundThe incidence of multidrug-resistant tuberculosis (MDR-TB) remains critically high in countries of the former Soviet Union, where >20% of new cases and >50% of previously treated cases have resistance to rifampin and isoniazid. Transmission of resistant strains, as opposed to resistance selected through inadequate treatment of drug-susceptible tuberculosis (TB), is the main driver of incident MDR-TB in these countries. METHODS AND

findingsWe conducted a prospective, genomic analysis of all culture-positive TB cases diagnosed in 2018 and 2019 in the Republic of Moldova. We used phylogenetic methods to identify putative transmission clusters; spatial and demographic data were analyzed to further describe local transmission of Mycobacterium tuberculosis. Of 2,236 participants, 779 (36%) had MDR-TB, of whom 386 (50%) had never been treated previously for TB. Moreover, 92% of multidrug-resistant M. tuberculosis strains belonged to putative transmission clusters. Phylogenetic reconstruction identified 3 large clades that were comprised nearly uniformly of MDR-TB: 2 of these clades were of Beijing lineage, and 1 of Ural lineage, and each had additional distinct clade-specific second-line drug resistance mutations and geographic distributions. Spatial and temporal proximity between pairs of cases within a cluster was associated with greater genomic similarity. Our study lasted for only 2 years, a relatively short duration compared with the natural history of TB, and, thus, the ability to infer the full extent of transmission is limited.

conclusionsThe MDR-TB epidemic in Moldova is associated with the local transmission of multiple M. tuberculosis strains, including distinct clades of highly drug-resistant M. tuberculosis with varying geographic distributions and drug resistance profiles. This study demonstrates the role of comprehensive genomic surveillance for understanding the transmission of M. tuberculosis and highlights the urgency of interventions to interrupt transmission of highly drug-resistant M. tuberculosis.

Indexed as

Mycobacterium tuberculosisTuberculosisTuberculosis, Multidrug-ResistantAntitubercular AgentsDrug Resistance, Multiple, BacterialGenotypeHumansMoldovaPhylogenyPhylogeographyProspective StudiesAntitubercular Agents

Identifiers

PMID35192619
PMCPMC8903246
OpenAlexW4213006864

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.