Evidence map›Paper›PMID 35192607›Full record

ArticlePLoS biology2022

LRRK2 dynamics analysis identifies allosteric control of the crosstalk between its catalytic domains.

Jui-Hung Weng, Phillip C Aoto, Robin Lorenz, Jian Wu, Sven H Schmidt, Jascha T Manschwetus, Pallavi Kaila-Sharma, Steve Silletti, Sebastian Mathea, Deep Chatterjee and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. LRRK2: Molecular Mechanisms in Parkinson's Disease.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Jui-Hung WengDepartment of Pharmacology, University of California, San Diego, California, United States of America.ORCID 0000-0002-0432-3515
Phillip C AotoDepartment of Pharmacology, University of California, San Diego, California, United States of America.
Robin LorenzDepartment of Biochemistry, University of Kassel, Kassel, Germany.ORCID 0000-0002-6425-3790
Jian WuDepartment of Pharmacology, University of California, San Diego, California, United States of America.
Sven H SchmidtDepartment of Biochemistry, University of Kassel, Kassel, Germany.
Jascha T ManschwetusDepartment of Biochemistry, University of Kassel, Kassel, Germany.ORCID 0000-0003-3136-9153
Pallavi Kaila-SharmaDepartment of Pharmacology, University of California, San Diego, California, United States of America.
Steve SillettiDepartment of Chemistry and Biochemistry, University of California, San Diego, California, United States of America.
Sebastian MatheaInstitute for Pharmaceutical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.
Deep ChatterjeeInstitute for Pharmaceutical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.
Stefan KnappInstitute for Pharmaceutical Chemistry, Goethe University Frankfurt, Frankfurt am Main, Germany.
Friedrich W HerbergDepartment of Biochemistry, University of Kassel, Kassel, Germany.ORCID 0000-0001-7117-7653
Susan S TaylorDepartment of Pharmacology, University of California, San Diego, California, United States of America.ORCID 0000-0002-7702-6108
University of California San Diego · USUniversity of Kassel · DEGoethe University Frankfurt · DE

Funding

Contemporary Approaches to Cancer Cell Signaling and CommunicationT32CA009523 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DONOGHUE, DANIEL J, YANG, JING · 1985 to 2025
$12.1M
Synapt G2-S System with HXMS AutomationS10OD016234 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KOMIVES, ELIZABETH A. · 2013 to 2013
$600k
NCI NIH HHS T32 CA009523NIH HHS S10 OD016234
6 · The paper itself

Abstract

The 2 major molecular switches in biology, kinases and GTPases, are both contained in the Parkinson disease-related leucine-rich repeat kinase 2 (LRRK2). Using hydrogen-deuterium exchange mass spectrometry (HDX-MS) and molecular dynamics (MD) simulations, we generated a comprehensive dynamic allosteric portrait of the C-terminal domains of LRRK2 (LRRK2RCKW). We identified 2 helices that shield the kinase domain and regulate LRRK2 conformation and function. One helix in COR-B (COR-B Helix) tethers the COR-B domain to the αC helix of the kinase domain and faces its activation loop, while the C-terminal helix (Ct-Helix) extends from the WD40 domain and interacts with both kinase lobes. The Ct-Helix and the N-terminus of the COR-B Helix create a "cap" that regulates the N-lobe of the kinase domain. Our analyses reveal allosteric sites for pharmacological intervention and confirm the kinase domain as the central hub for conformational control.

Indexed as

Catalytic DomainMolecular Dynamics SimulationProtein ConformationAllosteric RegulationAllosteric SiteDeuterium Exchange MeasurementHumansLeucine-Rich Repeat Serine-Threonine Protein Kinase-2Mass SpectrometryMutationProtein BindingLeucine-Rich Repeat Serine-Threonine Protein Kinase-2

Identifiers

PMID35192607
PMCPMC8863276
OpenAlexW4213439607

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.