Evidence map›Paper›PMID 35192008›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2022

Leveraging probability concepts for cultivar recommendation in multi-environment trials.

Kaio O G Dias, Jhonathan P R Dos Santos, Matheus D Krause, Hans-Peter Piepho, Lauro J M Guimarães, Maria M Pastina, Antonio A F Garcia

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 27 citations in OpenAlex.

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  6. GIS-FA: an approach to integrating thematic maps, factor-analytic, and envirotyping for cultivar targeting.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 3 countries.

Kaio O G Dias *Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil.ORCID http://orcid.org/0000-0003-0634-3277
Jhonathan P R Dos Santos *Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil.
Matheus D KrauseDepartment of Agronomy, Iowa State University, Ames, IA, USA.
Hans-Peter PiephoBiostatistics Unit, University of Hohenheim, Stuttgart, Germany.
Lauro J M GuimarãesEmbrapa Maize and Sorghum, Sete Lagoas, MG, Brazil.
Maria M PastinaEmbrapa Maize and Sorghum, Sete Lagoas, MG, Brazil.
Antonio A F GarciaDepartment of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP, Brazil. augusto.garcia@usp.br.
Brazilian Agricultural Research Corporation · BRUniversidade de São Paulo · BRIowa State University · USUniversidade Federal de Viçosa · BRUniversity of Hohenheim · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageWe propose using probability concepts from Bayesian models to leverage a more informed decision-making process toward cultivar recommendation in multi-environment trials. Statistical models that capture the phenotypic plasticity of a genotype across environments are crucial in plant breeding programs to potentially identify parents, generate offspring, and obtain highly productive genotypes for target environments. In this study, our aim is to leverage concepts of Bayesian models and probability methods of stability analysis to untangle genotype-by-environment interaction (GEI). The proposed method employs the posterior distribution obtained with the No-U-Turn sampler algorithm to get Hamiltonian Monte Carlo estimates of adaptation and stability probabilities. We applied the proposed models in two empirical tropical datasets. Our findings provide a basis to enhance our ability to consider the uncertainty of cultivar recommendation for global or specific adaptation. We further demonstrate that probability methods of stability analysis in a Bayesian framework are a powerful tool for unraveling GEI given a defined intensity of selection that results in a more informed decision-making process toward cultivar recommendation in multi-environment trials.

Indexed as

EnvironmentPlant BreedingBayes TheoremGenotypeProbability

Identifiers

PMID35192008
OpenAlexW4213271616

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.