Evidence map›Paper›PMID 35190823›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2022

Genomic Correlates of Outcome in Tumor-Infiltrating Lymphocyte Therapy for Metastatic Melanoma.

Caitlin A Creasy, Yuzhong Jeff Meng, Marie-Andrée Forget, Tatiana Karpinets, Katarzyna Tomczak, Chip Stewart, Carlos A Torres-Cabala, Shari Pilon-Thomas, Amod A Sarnaik, James J Mulé and 17 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Trial
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  9. Biomarkers for response to TIL therapy: a comprehensive review.Journal for immunotherapy of cancer · 2024
    Review
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  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 6 institutions in 2 countries.

Caitlin A Creasy *Department of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0002-6271-0337
Yuzhong Jeff Meng *Broad Institute of Harvard and MIT, Cambridge, Massachusetts.ORCID 0000-0002-9044-4777
Marie-Andrée ForgetDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Tatiana KarpinetsDepartment of Genomic Medicine, The University of Texas MDACC, Houston, Texas.
Katarzyna TomczakDepartment of Translational Molecular Pathology, The University of Texas MDACC, Houston, Texas.ORCID 0000-0003-0553-8056
Chip StewartBroad Institute of Harvard and MIT, Cambridge, Massachusetts.ORCID 0000-0003-2245-9552
Carlos A Torres-CabalaDepartment of Pathology, The University of Texas MDACC, Houston, Texas.ORCID 0000-0001-7422-0661
Shari Pilon-ThomasDepartment of Immunology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida.ORCID 0000-0001-7785-3034
Amod A SarnaikDepartment of Cutaneous Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida.
James J MuléDepartment of Immunology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, Florida.ORCID 0000-0001-7354-0516
Levi GarrawayBroad Institute of Harvard and MIT, Cambridge, Massachusetts.
Matias BustosDepartment of Translational Molecular Medicine, Saint John's Cancer Institute, Saint John's Health Center, Santa Monica, California.ORCID 0000-0001-9625-1127
Jianhua ZhangDepartment of Genomic Medicine, The University of Texas MDACC, Houston, Texas.
Sapna P PatelDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0003-1339-1517
Adi DiabDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Isabella C GlitzaDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0002-4530-7765
Cassian YeeDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0002-4429-7307
Hussein TawbiDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Michael K WongDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Jennifer McQuadeDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0002-2393-2172
Dave S B HoonDepartment of Translational Molecular Medicine, Saint John's Cancer Institute, Saint John's Health Center, Santa Monica, California.
Michael A DaviesDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0002-0977-0912
Patrick HwuDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Rodabe N AmariaDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.
Cara HaymakerDepartment of Translational Molecular Pathology, The University of Texas MDACC, Houston, Texas.ORCID 0000-0002-1317-9287
Rameen BeroukhimBroad Institute of Harvard and MIT, Cambridge, Massachusetts.
Chantale BernatchezDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, Texas.ORCID 0000-0001-5926-3460
The University of Texas MD Anderson Cancer Center · USBroad Institute · USMoffitt Cancer Center · USCenter for Genomic Science · ITSaint John's Health Center · USUniversity of Houston · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
The University of Texas MD Anderson Cancer Center SPORE in MelanomaP50CA221703 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DAVIES, MICHAEL · 2019 to 2023
$10.3M
Biomarkers and Resistance Mechanisms in Melanoma T-cell TherapyR01CA184845 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI HWU, PATRICK, MULE, JAMES J. · 2014 to 2018
$1.7M
NCI NIH HHS P30 CA016672NCI NIH HHS P50 CA221703NCI NIH HHS R01 CA184845
6 · The paper itself

Abstract

purposeAdoptive cell therapy (ACT) of tumor-infiltrating lymphocytes (TIL) historically yields a 40%-50% response rate in metastatic melanoma. However, the determinants of outcome are largely unknown. EXPERIMENTAL

designWe investigated tumor-based genomic correlates of overall survival (OS), progression-free survival (PFS), and response to therapy by interrogating tumor samples initially collected to generate TIL infusion products.

resultsWhole-exome sequencing (WES) data from 64 samples indicated a positive correlation between neoantigen load and OS, but not PFS or response to therapy. RNA sequencing analysis of 34 samples showed that expression of PDE1C, RTKN2, and NGFR was enriched in responders who had improved PFS and OS. In contrast, the expression of ELFN1 was enriched in patients with unfavorable response, poor PFS and OS, whereas enhanced methylation of ELFN1 was observed in patients with favorable outcomes. Expression of ELFN1, NGFR, and PDE1C was mainly found in cancer-associated fibroblasts and endothelial cells in tumor tissues across different cancer types in publicly available single-cell RNA sequencing datasets, suggesting a role for elements of the tumor microenvironment in defining the outcome of TIL therapy.

conclusionsOur findings suggest that transcriptional features of melanomas correlate with outcomes after TIL therapy and may provide candidates to guide patient selection.

Indexed as

MelanomaNeoplasms, Second PrimaryCell- and Tissue-Based TherapyEndothelial CellsGenomicsHumansImmunotherapy, AdoptiveLymphocytes, Tumor-InfiltratingTumor Microenvironment

Identifiers

PMID35190823
PMCPMC9064946
OpenAlexW3035143809

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.