Evidence map›Paper›PMID 35190564›Full record

ArticleNature communications2022

Global and transcription-coupled repair of 8-oxoG is initiated by nucleotide excision repair proteins.

Namrata Kumar, Arjan F Theil, Vera Roginskaya, Yasmin Ali, Michael Calderon, Simon C Watkins, Ryan P Barnes, Patricia L Opresko, Alex Pines, Hannes Lans and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Review
  3. An Integrated DNA Nanoprobe for Intranuclear Imaging and In Situ Profiling of OGG1 Activity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  7. Intermittent Fasting Enhances Genome Integrity and Cytoprotective Pathways via (BHB) β-Hydroxybutyrate Signaling and Chromatin Remodeling.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Oxidative Stress and DNA Damage at Telomeres.Cold Spring Harbor perspectives in biology · 2025
    Review
  15. Aflatoxin BEnvironmental and molecular mutagenesis · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Frontiers in pharmacology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Namrata KumarMolecular Genetics and Developmental Biology graduate program, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Arjan F TheilDepartment of Molecular Genetics, Oncode Institute, Erasmus MC, University Medical Center Rotterdam, Dr. Molewaterplein 40, 3015 GD, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0001-5779-1681
Vera RoginskayaUPMC Hillman Cancer Center, Pittsburgh, PA, USA.
Yasmin AliDepartment of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.
Michael CalderonCenter for Biologic Imaging, University of Pittsburgh, Pittsburgh, PA, USA.
Simon C WatkinsCenter for Biologic Imaging, University of Pittsburgh, Pittsburgh, PA, USA.
Ryan P BarnesUPMC Hillman Cancer Center, Pittsburgh, PA, USA.
Patricia L OpreskoUPMC Hillman Cancer Center, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-6470-2189
Alex PinesDepartment of Molecular Genetics, Oncode Institute, Erasmus MC, University Medical Center Rotterdam, Dr. Molewaterplein 40, 3015 GD, Rotterdam, The Netherlands.
Hannes LansDepartment of Molecular Genetics, Oncode Institute, Erasmus MC, University Medical Center Rotterdam, Dr. Molewaterplein 40, 3015 GD, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-4417-5358
Wim VermeulenDepartment of Molecular Genetics, Oncode Institute, Erasmus MC, University Medical Center Rotterdam, Dr. Molewaterplein 40, 3015 GD, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-3616-734X
Bennett Van HoutenMolecular Genetics and Developmental Biology graduate program, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA. vanhoutenb@upmc.edu.ORCID http://orcid.org/0000-0002-4009-2478
University of Pittsburgh · USErasmus MC · NL

Funding

Supplement to Promote DiversityR35ES030396 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Patricia L Opresko · 2019 to 2026
$7.5M
Watching cooperative interactions between base and nucleotide excision repair proteinsR35ES031638 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Bennett Van Houten · 2020 to 2026
$6.2M
DNA damage recognition by nucleotide excision repair proteinsR01ES019566 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VAN HOUTEN, BENNETT · 2011 to 2020
$3.9M
Damage Sensor role of UV-DDB during base excision repairR01ES028686 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VAN HOUTEN, BENNETT · 2018 to 2019
$729k
Investigating the Impact of Telomere Specific Oxidative Base Damage in Cellular AgingF32AG067710 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BARNES, RYAN P · 2020 to 2021
$106k
NIA NIH HHS F32 AG067710NIEHS NIH HHS R01 ES019566NIEHS NIH HHS R01 ES028686NIEHS NIH HHS R35 ES030396NIEHS NIH HHS R35 ES031638
6 · The paper itself

Abstract

UV-DDB, consisting of subunits DDB1 and DDB2, recognizes UV-induced photoproducts during global genome nucleotide excision repair (GG-NER). We recently demonstrated a noncanonical role of UV-DDB in stimulating base excision repair (BER) which raised several questions about the timing of UV-DDB arrival at 8-oxoguanine (8-oxoG), and the dependency of UV-DDB on the recruitment of downstream BER and NER proteins. Using two different approaches to introduce 8-oxoG in cells, we show that DDB2 is recruited to 8-oxoG immediately after damage and colocalizes with 8-oxoG glycosylase (OGG1) at sites of repair. 8-oxoG removal and OGG1 recruitment is significantly reduced in the absence of DDB2. NER proteins, XPA and XPC, also accumulate at 8-oxoG. While XPC recruitment is dependent on DDB2, XPA recruitment is DDB2-independent and transcription-coupled. Finally, DDB2 accumulation at 8-oxoG induces local chromatin unfolding. We propose that DDB2-mediated chromatin decompaction facilitates the recruitment of downstream BER proteins to 8-oxoG lesions.

Indexed as

DNA RepairCell Line, TumorChromatinChromatin Assembly and DisassemblyDNA-Binding ProteinsDNA DamageDNA GlycosylasesGene Knockdown TechniquesGene Knockout TechniquesGuanineHEK293 CellsHumansUltraviolet RaysXeroderma Pigmentosum Group A Protein8-hydroxyguanineChromatinDDB2 protein, humanDNA-Binding ProteinsDNA GlycosylasesGuanineoxoguanine glycosylase 1, humanXeroderma Pigmentosum Group A ProteinXPA protein, humanXPC protein, human

Identifiers

PMID35190564
PMCPMC8861037
OpenAlexW4213360201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.