Evidence map›Paper›PMID 35190543›Full record

ArticleCell discovery2022

Cryo-EM structures of human p97 double hexamer capture potentiated ATPase-competent state.

Haishan Gao, Faxiang Li, Zhejian Ji, Zhubing Shi, Yang Li, Hongtao Yu

Open access · goldAbstract read
In one paragraph

Article in Cell discovery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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  8. Allosteric activation of VCP, an AAA unfoldase, by small molecule mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  9. TheeLife · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Haishan Gao *School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. gaohaishan@westlake.edu.cn.ORCID http://orcid.org/0000-0002-4954-8793
Faxiang Li *Department of Pharmacology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Zhejian JiHoward Hughes Medical Institute, Department of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6835-0854
Zhubing ShiSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, China.ORCID http://orcid.org/0000-0002-9624-4960
Yang LiDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Hongtao YuSchool of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. yuhongtao@westlake.edu.cn.
Westlake University · CNCentral South University · CNHoward Hughes Medical Institute · USThe University of Texas Southwestern Medical Center · US

Funding

Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RP160667-P2Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) DRG-2315-18Welch Foundation I-1441
6 · The paper itself

Abstract

The conserved ATPase p97 (Cdc48 in yeast) and adaptors mediate diverse cellular processes through unfolding polyubiquitinated proteins and extracting them from macromolecular assemblies and membranes for disaggregation and degradation. The tandem ATPase domains (D1 and D2) of the p97/Cdc48 hexamer form stacked rings. p97/Cdc48 can unfold substrates by threading them through the central pore. The pore loops critical for substrate unfolding are, however, not well-ordered in substrate-free p97/Cdc48 conformations. How p97/Cdc48 organizes its pore loops for substrate engagement is unclear. Here we show that p97/Cdc48 can form double hexamers (DH) connected through the D2 ring. Cryo-EM structures of p97 DH reveal an ATPase-competent conformation with ordered pore loops. The C-terminal extension (CTE) links neighboring D2s in each hexamer and expands the central pore of the D2 ring. Mutations of Cdc48 CTE abolish substrate unfolding. We propose that the p97/Cdc48 DH captures a potentiated state poised for substrate engagement.

Identifiers

PMID35190543
PMCPMC8861141
OpenAlexW4213274926

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.