Evidence map›Paper›PMID 35190386›Full record

ArticleAnnals of the rheumatic diseases2022

Peripheral blood gene expression profiling shows predictive significance for response to mycophenolate in systemic sclerosis-related interstitial lung disease.

Shervin Assassi, Elizabeth R Volkmann, W Jim Zheng, Xuan Wang, Holly Wilhalme, Marka A Lyons, Michael D Roth, Donald P Tashkin

Open access · hybridAbstract read
In one paragraph

Article in Annals of the rheumatic diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Proceedings of the 2Mediterranean journal of rheumatology · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Systemic sclerosis.Lancet (London, England) · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Predicting the Progression of Very Early Systemic Sclerosis: Current Insights.Open access rheumatology : research and reviews · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shervin AssassiRheumatology, University of Texas Health Science Center at Houston, Houston, Texas, USA shervin.assassi@uth.tmc.edu.ORCID http://orcid.org/0000-0002-8059-9978
Elizabeth R VolkmannMedicine, University of California Los Angeles, Los Angeles, California, USA.ORCID http://orcid.org/0000-0003-3750-6569
W Jim ZhengSchool of Biomedical Informatics, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Xuan WangBaylor Institute for Immunology Research, Dallas, Texas, USA.
Holly WilhalmeMedicine, University of California Los Angeles, Los Angeles, California, USA.
Marka A LyonsRheumatology, University of Texas Health Science Center at Houston, Houston, Texas, USA.
Michael D RothMedicine, University of California Los Angeles, Los Angeles, California, USA.
Donald P TashkinMedicine, University of California Los Angeles, Los Angeles, California, USA.
University of California, Los Angeles · USThe University of Texas Health Science Center at Houston · US

Funding

Convalescent Plasma to Limit Coronavirus Associated ComplicationsUL1TR003167 · NCATS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KARP, DANIEL D, MCPHERSON, DAVID D · 2019 to 2023
$45.3M
MOCSLID-DCCR01HL089901 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ELASHOFF, ROBERT M · 2008 to 2012
$9.1M
MOCSLID-CCCR01HL089758 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TASHKIN, DONALD P · 2008 to 2012
$2.0M
CFlm25 mediated alternative polyadenylation regulates fibrosis in systemic sclerosisR01AR073284 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, MILLS, TINGTING WENG · 2019 to 2023
$1.7M
Role of Interferon Regulatory Factor 7 in Systemic Sclerosis PathogenesisR56AR078211 · NIAMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ASSASSI, SHERVIN, WU, MINGHUA · 2021 to 2021
$346k
NCATS NIH HHS UL1 TR003167NHLBI NIH HHS R01 HL089758NHLBI NIH HHS R01 HL089901NIAMS NIH HHS R01 AR073284NIAMS NIH HHS R56 AR078211
6 · The paper itself

Abstract

objectivesTo characterise the peripheral blood cell (PBC) gene expression changes ensuing from mycophenolate mofetil (MMF) or cyclophosphamide (CYC) treatment and to determine the predictive significance of baseline PBC transcript scores for response to immunosuppression in systemic sclerosis (SSc)-related interstitial lung disease (ILD).

methodsPBC RNA samples from baseline and 12-month visits, corresponding to the active treatment period of both arms in Scleroderma Lung Study II, were investigated by global RNA sequencing. Joint models were created to examine the predictive significance of

results134 patients with SSc-ILD (CYC=69 and MMF=65) were investigated. CYC led to an upregulation of erythropoiesis, inflammation and myeloid lineage-related modules and a downregulation of lymphoid lineage-related modules. The modular changes resulting from MMF treatment were more modest and included a downregulation of plasmablast module. In the longitudinal analysis, none of the baseline transcript module scores showed predictive significance for FVC% course in the CYC arm. In contrast, in the MMF arm, higher baseline lymphoid lineage modules predicted better subsequent FVC% course, while higher baseline myeloid lineage and inflammation modules predicted worse subsequent FVC% course.

conclusionConsistent with the primary mechanism of action of MMF on lymphocytes, patients with SSc-ILD with higher baseline lymphoid module scores had better FVC% course, while those with higher myeloid cell lineage activation score had poorer FVC% course on MMF.

Indexed as

Lung Diseases, InterstitialScleroderma, SystemicCyclophosphamideGene Expression ProfilingHumansImmunosuppressive AgentsInflammationLungMycophenolic AcidVital CapacityCyclophosphamideImmunosuppressive AgentsMycophenolic Acidautoimmune diseasespulmonary fibrosissclerodermasystemic

Identifiers

PMID35190386
PMCPMC9117450
OpenAlexW4212906578

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.