Evidence map›Paper›PMID 35188534›Full record

ArticleBiology open2022

A deep-dive into fictive locomotion - a strategy to probe cellular activity during speed transitions in fictively swimming zebrafish larvae.

Harmen Kornelis Koning, Aikeremu Ahemaiti, Henrik Boije

Abstract read
In one paragraph

Article in Biology open, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Harmen Kornelis KoningDepartment of Immunology, Genetics and Pathology, Uppsala University, S-751 08, Uppsala, Sweden.
Aikeremu AhemaitiDepartment of Immunology, Genetics and Pathology, Uppsala University, S-751 08, Uppsala, Sweden.
Henrik BoijeDepartment of Immunology, Genetics and Pathology, Uppsala University, S-751 08, Uppsala, Sweden.ORCID 0000-0002-4877-9725

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fictive locomotion is frequently used to study locomotor output in paralyzed animals. We have evaluated the character of swim episodes elicited by different strategies in zebrafish. Motor output was measured on both sides of a body segment using electrodes and a pipeline for synchronizing stimulation and recording, denoising data and peak-finding was developed. The optomotor response generated swims most equivalent to spontaneous activity, while electrical stimulation and NMDA application caused various artefacts. Our optimal settings, optomotor stimulation using 5-day-old larvae, were combined with calcium imaging and optogenetics to validate the setup's utility. Expression of GCaMP5G by the mnx1 promoter allowed correlation of calcium traces of dozens of motor neurons to the fictive locomotor output. Activation of motor neurons through channelrhodopsin produced aberrant locomotor episodes. This strategy can be used to investigate novel neuronal populations in a high-throughput manner to reveal their role in shaping motor output. This article has an associated First Person interview with the first author of the paper.

Indexed as

SwimmingZebrafishAnimalsHomeodomain ProteinsLarvaLocomotionMotor NeuronsTranscription FactorsZebrafish ProteinsHomeodomain ProteinsMnx1 protein, zebrafishTranscription FactorsZebrafish ProteinsCalcium imagingLocomotor networkOptogeneticsOptomotor response

Identifiers

PMID35188534
PMCPMC8966775

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.