Evidence map›Paper›PMID 35188523›Full record

ArticleOrganic & biomolecular chemistry2022

Sulfonated red and far-red rhodamines to visualize SNAP- and Halo-tagged cell surface proteins.

Ramona Birke, Julia Ast, Dorien A Roosen, Joon Lee, Kilian Roßmann, Christiane Huhn, Bettina Mathes, Michael Lisurek, David Bushiri, Han Sun and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 40 citations in OpenAlex.

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  19. Chemical science · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Ramona BirkeLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. broichhagen@fmp-berlin.de.
Julia AstInstitute of Metabolism and Systems Research (IMSR), University of Birmingham, Birmingham, B15 2TT, UK. d.hodson@bham.ac.uk.ORCID 0000-0002-0039-4762
Dorien A RoosenDepartment of Molecular Pharmacology and Cell Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.
Joon LeeDepartment of Biochemistry, Weill Cornell Medicine, New York, NY 10065, USA.
Kilian RoßmannLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. broichhagen@fmp-berlin.de.ORCID 0000-0003-4965-9669
Christiane HuhnLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. broichhagen@fmp-berlin.de.ORCID 0000-0001-9862-8784
Bettina MathesDepartment of Chemical Biology, Max Planck Institute for Medical Research, Heidelberg, Germany.
Michael LisurekStructural Chemistry and Computational Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.
David BushiriStructural Chemistry and Computational Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0000-0002-4942-757X
Han SunStructural Chemistry and Computational Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0000-0002-1655-0838
Ben JonesSection of Endocrinology and Investigative Medicine, Imperial College London, London W12 0NN, UK.ORCID 0000-0003-0461-2584
Martin LehmannDepartment of Molecular Pharmacology and Cell Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0000-0002-8370-6353
Joshua LevitzDepartment of Biochemistry, Weill Cornell Medicine, New York, NY 10065, USA.
Volker HauckeDepartment of Molecular Pharmacology and Cell Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID 0000-0003-3119-6993
David J HodsonInstitute of Metabolism and Systems Research (IMSR), University of Birmingham, Birmingham, B15 2TT, UK. d.hodson@bham.ac.uk.ORCID 0000-0002-8641-8568
Johannes BroichhagenLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany. broichhagen@fmp-berlin.de.ORCID 0000-0003-3084-6595
Leibniz-Forschungsinstitut für Molekulare Pharmakologie · DECornell University · USMax Planck Institute for Medical Research · DEChurchill Hospital · GBImperial College London · GBUniversity of Birmingham · GB

Funding

Molecular Mechanisms of Synaptic G Protein-Coupled ReceptorsR35GM124731 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LEVITZ, JOSHUA · 2017 to 2021
$2.1M
Medical Research Council MR/K023667/1Medical Research Council MR/N00275X/1Medical Research Council MR/S025618/1NIGMS NIH HHS R35 GM124731
6 · The paper itself

Abstract

The (in)ability to permeate membranes is a key feature of chemical biology probes that defines their suitability for specific applications. Here we report sulfonated rhodamines that endow xanthene dyes with cellular impermeability for analysis of surface proteins. We fuse charged sulfonates to red and far-red dyes to obtain Sulfo549 and Sulfo646, respectively, and further link these to benzylguanine and choloralkane substrates for SNAP-tag and Halo-tag labelling. Sulfonated rhodamine-conjugated fluorophores maintain desirable photophysical properties, such as brightness and photostability. While transfected cells with a nuclear localized SNAP-tag remain unlabelled, extracellular exposed tags can be cleanly visualized. By multiplexing with a permeable rhodamine, we are able to differentiate extra- and intracellular SNAP- and Halo-tags, including those installed on the glucagon-like peptide-1 receptor, a prototypical class B G protein-coupled receptor. Sulfo549 and Sulfo646 also labelled transfected neurons derived from induced pluripotent stem cells (iPSCs), allowing STED nanoscopy of the axonal membrane. Together, this work provides a new avenue for rendering dyes impermeable for exclusive extracellular visualization

Indexed as

Fluorescent DyesMembrane ProteinsRhodaminesFluorescent DyesMembrane ProteinsRhodamines

Identifiers

PMID35188523
PMCPMC9346974
OpenAlexW4212934339

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.