Evidence map›Paper›PMID 35187167›Full record

ArticleBioMed research international2022

Identification of a Five-Gene Panel to Assess Prognosis for Gastric Cancer.

Shuxin Li, Qianqian Mao, Zixuan Zhang, Yuqi Wang, Duoxuan Chen, Zhenwen Chen, Jianyi Lu

Abstract read
In one paragraph

Article in BioMed research international, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Shuxin LiSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0001-6455-4481
Qianqian MaoSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0002-8347-5823
Zixuan ZhangSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0003-0921-1974
Yuqi WangSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0001-7950-7127
Duoxuan ChenSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0001-9057-6617
Zhenwen ChenSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0003-4678-3437
Jianyi LuSchool of Basic Medical Sciences, Capital Medical University, Beijing Key Laboratory of Cancer Invasion & Metastasis Research, Beijing, China.ORCID https://orcid.org/0000-0002-1704-7361

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

methodsTwo datasets were used as training and validation cohorts to establish the predictive model. We used three types of screening criteria: background analysis, pathway analysis, and functional analysis provided by the cBioportal website. Fisher's exact test and multivariable logistic regression were performed to screen out related genes. Furthermore, we performed receiver operating characteristic (ROC) and Kaplan-Meier curve analyses to evaluate the correlation between the selected genes and overall survival.

resultWe screened five genes (KNL1, NRXN1, C6, CCDC169-SOHLH2, and TTN) that were highly related to recurrence of GC. The area under the receiver operating characteristic (ROC) curve was 0.813, which was much higher than that of the baseline model (AUC = 0.699). This result suggested that the mutation of five selected genes had a significant effect on the prediction of recurrence compared with other factors (age, stages, history, etc.). Furthermore, the Kaplan-Meier estimator also revealed that the mutation of five genes positively correlated with patient survival.

conclusionsThe patients who have mutations in these five genes may experience longer survival than those who do not have mutations. This five-gene panel will likely be a practical tool for prognostic evaluation and will provide another possible way for clinicians to determine therapy.

Indexed as

AdultAgedAlgorithmsBasic Helix-Loop-Helix ProteinsBiomarkers, TumorCalcium-Binding ProteinsComplement C6ConnectinDatasets as TopicFemaleGene Expression Regulation, NeoplasticHumansMaleMicrotubule-Associated ProteinsMiddle AgedNeoplasm GradingBasic Helix-Loop-Helix ProteinsBiomarkers, TumorCalcium-Binding ProteinsComplement C6ConnectinKnl1 protein, humanMicrotubule-Associated ProteinsNeural Cell Adhesion MoleculesNRXN1 protein, humanSOHLH2 protein, humanTTN protein, human

Identifiers

PMID35187167
PMCPMC8850031

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.