Evidence map›Paper›PMID 35185925›Full record

ArticleFrontiers in immunology2022

High Interferon Signature Leads to Increased STAT1/3/5 Phosphorylation in PBMCs From SLE Patients by Single Cell Mass Cytometry.

Gloria Yiu, Tue Kruse Rasmussen, Brandon L Tsai, Vivian K Diep, David J Haddon, Jennifer Tsoi, Gopika D Miller, Begoña Comin-Anduix, Bent Deleuran, Gay M Crooks and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Lupus Nephritis Risk Factors and Biomarkers: An Update.International journal of molecular sciences · 2023
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Gloria YiuDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
Tue Kruse RasmussenDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
Brandon L TsaiDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, CA, United States.
Vivian K DiepDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
David J HaddonDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
Jennifer TsoiDepartment of Surgery David Geffen School of Medicine, Johnson Comprehensive Cancer Center, University of California, Los Angeles, Los Angeles, CA, United States.
Gopika D MillerDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
Begoña Comin-AnduixDepartment of Surgery David Geffen School of Medicine, Johnson Comprehensive Cancer Center, University of California, Los Angeles, Los Angeles, CA, United States.
Bent DeleuranDepartment of Biomedicine, Aarhus University, Aarhus, Denmark.
Gay M CrooksJonsson Comprehensive Cancer Center, University of California, Los Angeles (UCLA), Los Angeles, CA, United States.
Paul J UtzDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, CA, United States.
University of California, Los Angeles · USStanford Medicine · USAarhus University Hospital · DKStanford University · US

Funding

Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
Ultra-Fast Epigenomic Maps for Monitoring AutoimmunityU19AI110491 · NIAID · STANFORD UNIVERSITY · PI MAECKER, HOLDEN T. · 2014 to 2018
$3.6M
NIAID NIH HHS R01 AI125197NIAID NIH HHS U19 AI110491
6 · The paper itself

Abstract

The establishment of an "interferon (IFN) signature" to subset SLE patients on disease severity has led to therapeutics targeting IFNα. Here, we investigate IFN signaling in SLE using multiplexed protein arrays and single cell cytometry by time of flight (CyTOF). First, the IFN signature for SLE patients (n=81) from the Stanford Lupus Registry is determined using fluidigm qPCR measuring 44 previously determined IFN-inducible transcripts. IFN-high (IFN-H) patients have increased SLE criteria and renal/CNS/immunologic involvement, and increased autoantibody reactivity against spliceosome-associated antigens. CyTOF analysis is performed on non-stimulated and stimulated (IFNα, IFNγ, IL-21) PBMCs from SLE patients (n=25) and HCs (n=9) in a panel identifying changes in phosphorylation of intracellular signaling proteins (pTOF). Another panel is utilized to detect changes in intracellular cytokine (ICTOF) production in non-stimulated and stimulated (PMA/ionomycin) PBMCs from SLE patients (n=31) and HCs (n=17). Bioinformatic analysis by MetaCyto and OMIQ reveal phenotypic changes in immune cell subsets between IFN-H and IFN-low (IFN-L) patients. Most notably, IFN-H patients exhibit increased STAT1/3/5 phosphorylation downstream of cytokine stimulation and increased phosphorylation of non-canonical STAT proteins. These results suggest that IFN signaling in SLE modulates STAT phosphorylation, potentially uncovering possible targets for future therapeutic approaches.

Indexed as

AdultFemaleFlow CytometryHumansInterferon Type IInterleukin-21InterleukinsLeukocytes, MononuclearLupus Erythematosus, SystemicMaleMiddle AgedPhosphorylationSignal TransductionSingle-Cell AnalysisSTAT1 Transcription FactorInterferon Type IInterleukin-21InterleukinsSTAT1 Transcription FactorautoantibodiesCyTOF mass cytometryinterferoninterferon signaturelupus (SLE)STAT1STAT3 (signal transducer and activator of transcription 3)

Identifiers

PMID35185925
PMCPMC8851522
OpenAlexW4210358832

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.