Evidence map›Paper›PMID 35184398›Full record

ArticleClinical and translational medicine2022

Single-cell RNA sequencing reveals the multi-cellular ecosystem in different radiological components of pulmonary part-solid nodules.

Yanmeng Li, Xiao Li, Haiming Chen, Kunkun Sun, Hao Li, Ying Zhou, Jun Wang, Fan Bai, Fan Yang

Open access · goldAbstract read
In one paragraph

Article in Clinical and translational medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 2 pooled it
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 2 syntheses or guidelines pooled it, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Yanmeng LiBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Xiao LiBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Haiming ChenBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Kunkun SunDepartment of Pathology, Peking University People's Hospital, Beijing, China.
Hao LiBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Ying ZhouDepartment of Pathology, Peking University People's Hospital, Beijing, China.
Jun WangBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Fan BaiBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.ORCID 0000-0001-6119-8936
Fan YangBiomedical Pioneering Innovation Center (BIOPIC), School of Life Sciences & Department of Thoracic Surgery, People's Hospital, Peking University, Beijing, China.
Peking University · CN

Funding

General Project of Beijing Municipal Natural Science Foundation 7212122Major Research Plan of the National Natural Science Foundation 92059203National Science and Technology Major Project 2019YFC1315702National Science Foundation for Distinguished Young Scholars T2125002Province Key Research and Development Program 2019B020226002
6 · The paper itself

Abstract

backgroundEarly-stage lung adenocarcinoma that radiologically manifests as part-solid nodules, consisting of both ground-glass and solid components, has distinctive growth patterns and prognosis. The characteristics of the tumour microenvironment and transcriptional features of the malignant cells of different radiological phenotypes remain poorly understood.

methodsTwelve treatment-naive patients with radiological part-solid nodules were enrolled. After frozen pathology was confirmed as lung adenocarcinoma, two regions (ground-glass and solid) from each of the 12 part-solid nodules and 5 normal lung tissues from 5 of the12 patients were subjected to single-cell sequencing by 10x Genomics. We used Seurat v3.1.5 for data integration and analysis.

resultsWe comprehensively dissected the multicellular ecosystem of the ground-glass and solid components of part-solid nodules at the single-cell resolution. In tumours, these components had comparable proportions of malignant cells. However, the angiogenesis, epithelial-to-mesenchymal transition, KRAS, p53, and cell-cycle signalling pathways were significantly up-regulated in malignant cells within solid components compared to those within ground-glass components. For the tumour microenvironment, the relative abundance of myeloid and NK cells tended to be higher in solid components than in ground-glass components. Slight subtype composition differences existed between the ground-glass and solid components. The T/NK cell subsets' cytotoxic function and the macrophages' pro-inflammation function were suppressed in solid components. Moreover, pericytes in solid components had a stronger communication related to angiogenesis promotion with endothelial cells and tumour cells.

conclusionThe cellular landscape of ground-glass components is significantly different from that of normal tissue and similar to that of solid components. However, transcriptional differences exist in the vital signalling pathways of malignant and immune cells within these components.

Indexed as

Adenocarcinoma of LungHumansSingle-Cell AnalysisSolitary Pulmonary NoduleTumor Microenvironmentearly-stage lung adenocarcinomapart-solid nodulespulmonary subsolid nodulessingle-cell RNA sequencingtumour microenvironment

Identifiers

PMID35184398
PMCPMC8858630
OpenAlexW4213200256

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.