Evidence map›Paper›PMID 35183127›Full record

ArticleBMC plant biology2022

The complete chloroplast genome of Onobrychis gaubae (Fabaceae-Papilionoideae): comparative analysis with related IR-lacking clade species.

Mahtab Moghaddam, Atsushi Ohta, Motoki Shimizu, Ryohei Terauchi, Shahrokh Kazempour-Osaloo

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 75 citations in OpenAlex.

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  18. Comparative Analysis of Plastome Sequences of SevenInternational journal of molecular sciences · 2024
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  20. Chloroplast Genomes Evolution and Phylogenetic Relationships ofInternational journal of molecular sciences · 2024
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Mahtab MoghaddamDepartment of Plant Biology, Faculty of Biological Sciences, Tarbiat Modares University, 14115-154, Tehran, Iran. mahtabmoghaddam@modares.ac.ir.
Atsushi OhtaGraduate School of Agriculture, Kyoto University, Kyoto, 617-0001, Japan.
Motoki ShimizuIwate Biotechnology Research Center, Kitakami, Iwate, 024-0003, Japan.
Ryohei TerauchiGraduate School of Agriculture, Kyoto University, Kyoto, 617-0001, Japan.
Shahrokh Kazempour-OsalooDepartment of Plant Biology, Faculty of Biological Sciences, Tarbiat Modares University, 14115-154, Tehran, Iran. skosaloo@modares.ac.ir.
Kyoto University · JPTarbiat Modares University · IRIwate Biotechnology Research Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlastome (Plastid genome) sequences provide valuable markers for surveying evolutionary relationships and population genetics of plant species. Papilionoideae (papilionoids) has different nucleotide and structural variations in plastomes, which makes it an ideal model for genome evolution studies. Therefore, by sequencing the complete chloroplast genome of Onobrychis gaubae in this study, the characteristics and evolutionary patterns of plastome variations in IR-loss clade were compared.

resultsIn the present study, the complete plastid genome of O. gaubae, endemic to Iran, was sequenced using Illumina paired-end sequencing and was compared with previously known genomes of the IRLC species of legumes. The O. gaubae plastid genome was 122,688 bp in length and included a large single-copy (LSC) region of 81,486 bp, a small single-copy (SSC) region of 13,805 bp and one copy of the inverted repeat (IR

conclusionsOur results reveal that the plastomes of the IRLC are dynamic molecules and show multiple gene losses and inversions. The identified hypervariable regions could be used as molecular markers for resolving phylogenetic relationships and species identification and also provide new insights into plastome evolution across IRLC.

Indexed as

Genome, ChloroplastPhylogenyCodon UsageFabaceaeGenome, PlantHigh-Throughput Nucleotide SequencingIranRepetitive Sequences, Nucleic AcidSelection, GeneticHypervariable regionIRLCOnobrychisPhylogenetic relationshipPlastome

Identifiers

PMID35183127
PMCPMC8858513
OpenAlexW4213203824

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.