Evidence map›Paper›PMID 35182166›Full record

ArticleAnalytical and bioanalytical chemistry2022

FFF-based high-throughput sequence shortlisting to support the development of aptamer-based analytical strategies.

Valentina Marassi, Monica Mattarozzi, Lorenzo Toma, Stefano Giordani, Luca Ronda, Barbara Roda, Andrea Zattoni, Pierluigi Reschiglian, Maria Careri

Abstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Valentina MarassiDepartment of Chemistry, University of Bologna, Via Selmi 2, Bologna, Italy. valentina.marassi2@unibo.it.
Monica MattarozziDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy. monica.mattarozzi@unipr.it.
Lorenzo TomaDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy.
Stefano GiordaniDepartment of Chemistry, University of Bologna, Via Selmi 2, Bologna, Italy.
Luca RondaDepartment of Medicine and Surgery, University of Parma, Parco Area delle Scienze, 23/A, 43124, Parma, Italy.
Barbara RodaDepartment of Chemistry, University of Bologna, Via Selmi 2, Bologna, Italy.
Andrea ZattoniDepartment of Chemistry, University of Bologna, Via Selmi 2, Bologna, Italy.
Pierluigi ReschiglianDepartment of Chemistry, University of Bologna, Via Selmi 2, Bologna, Italy.
Maria CareriDepartment of Chemistry, Life Sciences and Environmental Sustainability, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy.

Funding

Ministero dell'Istruzione, dell'Università e della Ricerca PRIN 2017 (Progetti di Ricerca di Rilevante Intere
6 · The paper itself

Abstract

Aptamers are biomimetic receptors that are increasingly exploited for the development of optical and electrochemical aptasensors. They are selected in vitro by the SELEX (Systematic Evolution of Ligands by Exponential Enrichment) procedure, but although they are promising recognition elements, for their reliable applicability for analytical purposes, one cannot ignore sample components that cause matrix effects. This particularly applies when different SELEX-selected aptamers and related truncated sequences are available for a certain target, and the choice of the aptamer should be driven by the specific downstream application. In this context, the present work aimed at investigating the potentialities of asymmetrical flow field-flow fractionation (AF4) with UV detection for the development of a screening method of a large number of anti-lysozyme aptamers towards lysozyme, including randomized sequences and an interfering agent (serum albumin). The possibility to work in native conditions and selectively monitor the evolution of untagged aptamer signal as a result of aptamer-protein binding makes the devised method effective as a strategy for shortlisting the most promising aptamers both in terms of affinity and in terms of selectivity, to support subsequent development of aptamer-based analytical devices.

Indexed as

Aptamers, NucleotideSELEX Aptamer TechniqueLigandsProtein BindingAptamers, NucleotideLigandsAptamersAptamer selectivityField-flow fractionationLysozymeScreening method

Identifiers

PMID35182166
PMCPMC9242963

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.