Evidence map›Paper›PMID 35181702›Full record

ArticleScientific reports2022

Optical imaging spectroscopy for rapid, primary screening of SARS-CoV-2: a proof of concept.

Emilio Gomez-Gonzalez, Alejandro Barriga-Rivera, Beatriz Fernandez-Muñoz, Jose Manuel Navas-Garcia, Isabel Fernandez-Lizaranzu, Francisco Javier Munoz-Gonzalez, Ruben Parrilla-Giraldez, Desiree Requena-Lancharro, Pedro Gil-Gamboa, Cristina Rosell-Valle and 19 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Polarimetric imaging for the detection of synthetic models of SARS-CoV-2: A proof of concept.Journal of quantitative spectroscopy & radiative transfer · 2023
    Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 12 institutions in 2 countries.

Emilio Gomez-GonzalezDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain. egomez@us.es.
Alejandro Barriga-RiveraDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain.
Beatriz Fernandez-MuñozUnidad de Producción y Reprogramación Celular (UPRC), Red Andaluza de Diseño y Traslación de Terapias Avanzadas, Consejería de Salud y Familias, Junta de Andalucía, 41092, Sevilla, Spain.
Jose Manuel Navas-GarciaEOD-CBRN Group, Spanish National Police, 41011, Sevilla, Spain.
Isabel Fernandez-LizaranzuDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain.
Francisco Javier Munoz-GonzalezDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain.
Ruben Parrilla-GiraldezTechnology and Innovation Centre, Universidad de Sevilla, 41012, Sevilla, Spain.
Desiree Requena-LancharroDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain.
Pedro Gil-GamboaDepartment of Applied Physics III, ETSI School of Engineering, Universidad de Sevilla, Camino de los Descubrimientos s/n, 41092, Sevilla, Spain.
Cristina Rosell-ValleInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Carmen Gomez-GonzalezService of Intensive Care, University Hospital 'Virgen del Rocio', 41013, Sevilla, Spain.
Maria Jose Mayorga-BuizaInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Maria Martin-LopezInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Olga MuñozInstituto de Astrofísica de Andalucía, CSIC, 18008, Granada, Spain.
Juan Carlos Gomez-MartinInstituto de Astrofísica de Andalucía, CSIC, 18008, Granada, Spain.
Maria Isabel Relimpio-LopezDepartment of Surgery, College of Medicine, Universidad de Sevilla, 41009, Seville, Spain.
Jesus Aceituno-CastroInstituto de Astrofísica de Andalucía, CSIC, 18008, Granada, Spain.
Manuel A Perales-EsteveDepartment of Electronic Engineering, ETSI School of Engineering, Universidad de Sevilla, 41092, Sevilla, Spain.
Antonio Puppo-MorenoService of Intensive Care, University Hospital 'Virgen del Rocio', 41013, Sevilla, Spain.
Francisco Jose Garcia-CozarDepartment of Biomedicine, Biotechnology and Public Health, University of Cadiz, 11003, Cadiz, Spain.
Lucia Olvera-CollantesInstituto de Investigación e Innovación Biomedica de Cádiz (INIBICA), 11009, Cadiz, Spain.
Raquel Gomez-DiazInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Silvia de Los Santos-TrigoCorporación Tecnológica de Andalucía, 41092, Sevilla, Spain.
Monserrat Huguet-CarrascoCER 'Dr. Gregorio Medina Blanco', 41807, Espartinas, Sevilla, Spain.
Manuel ReyCAMBRICO BIOTECH, 41015, Sevilla, Spain.
Emilia GomezJoint Research Centre, European Commission, 41092, Sevilla, Spain.
Rosario Sanchez-PernauteUnidad de Producción y Reprogramación Celular (UPRC), Red Andaluza de Diseño y Traslación de Terapias Avanzadas, Consejería de Salud y Familias, Junta de Andalucía, 41092, Sevilla, Spain.
Javier Padillo-RuizInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Javier Marquez-RivasInstitute of Biomedicine of Seville (IBIS), 41013, Sevilla, Spain.
Universidad de Sevilla · ESConsejería de Salud y Consumo · ESHospital Universitario Virgen del Rocío · ESInstituto de Astrofísica de Andalucía · ESInstituto de Biomedicina de Sevilla · ESCalar Alto Observatory · ESInstituto de Investigación Biomédica de A Coruña · ESJoint Research Center · ESJunta de Andalucía · ESTechnological Corporation of Andalusia · ESUniversidad de Cádiz · ESUniversity of Sydney · AU

Funding

Agencia Estatal de Investigación RTI2018-094465-JInstituto de Salud Carlos III COV20-00080Instituto de Salud Carlos III COV20-00173Ministerio de Ciencia e Innovación EQC2019-006240-P
6 · The paper itself

Abstract

Effective testing is essential to control the coronavirus disease 2019 (COVID-19) transmission. Here we report a-proof-of-concept study on hyperspectral image analysis in the visible and near-infrared range for primary screening at the point-of-care of SARS-CoV-2. We apply spectral feature descriptors, partial least square-discriminant analysis, and artificial intelligence to extract information from optical diffuse reflectance measurements from 5 µL fluid samples at pixel, droplet, and patient levels. We discern preparations of engineered lentiviral particles pseudotyped with the spike protein of the SARS-CoV-2 from those with the G protein of the vesicular stomatitis virus in saline solution and artificial saliva. We report a quantitative analysis of 72 samples of nasopharyngeal exudate in a range of SARS-CoV-2 viral loads, and a descriptive study of another 32 fresh human saliva samples. Sensitivity for classification of exudates was 100% with peak specificity of 87.5% for discernment from PCR-negative but symptomatic cases. Proposed technology is reagent-free, fast, and scalable, and could substantially reduce the number of molecular tests currently required for COVID-19 mass screening strategies even in resource-limited settings.

Indexed as

Spectroscopy, Near-InfraredExudates and TransudatesHumansMass ScreeningPoint-of-Care TestingProof of Concept StudySalivaSARS-CoV-2

Identifiers

PMID35181702
PMCPMC8857323
OpenAlexW4213079667

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.