Evidence map›Paper›PMID 35180770›Full record

ArticleCancer research2022

Patient-Derived Triple-Negative Breast Cancer Organoids Provide Robust Model Systems That Recapitulate Tumor Intrinsic Characteristics.

Sonam Bhatia, Melissa Kramer, Suzanne Russo, Payal Naik, Gayatri Arun, Kyle Brophy, Peter Andrews, Cheng Fan, Charles M Perou, Jonathan Preall and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 2 pooled it
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 2 syntheses or guidelines pooled it, 81 citations in OpenAlex.

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  17. Organoids glimpse: the nexus for diverse tumor heterogeneity.Frontiers in cell and developmental biology · 2026
    Review
  18. Garciniagifolone A, derived fromFrontiers in cell and developmental biology · 2026
    Article
  19. Review
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 1 country.

Sonam BhatiaCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0002-0124-2621
Melissa Kramer *Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Suzanne Russo *Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Payal Naik *Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Gayatri ArunCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Kyle BrophyCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Peter AndrewsCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Cheng FanUniversity of North Carolina, Lineberger Comprehensive Cancer Center, Department of Genetics, Chapel Hill, North Carolina.
Charles M PerouUniversity of North Carolina, Lineberger Comprehensive Cancer Center, Department of Genetics, Chapel Hill, North Carolina.ORCID 0000-0001-9827-2247
Jonathan PreallCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0002-7772-2437
Taehoon HaCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0002-4533-1140
Dennis PlenkerCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0003-3895-4064
David A TuvesonCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0002-8017-2712
Arvind RishiNorthwell Health, Department of Pathology, Lake Success, New York.
John E WilkinsonUniversity of Michigan, Department of Pathology, Ann Arbor, Michigan.ORCID 0000-0001-9174-8556
W Richard McCombieCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.
Karen KostroffNorthwell Health, Department of Surgical Oncology, Lake Success, New York.
David L SpectorCold Spring Harbor Laboratory, Cold Spring Harbor, New York, New York.ORCID 0000-0003-3614-4965
Cold Spring Harbor Laboratory · USNorthwell Health · USUniversity of North Carolina at Chapel Hill · USUniversity of Michigan · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
Predictive Modeling of the EGFR-MAPK pathway for Triple Negative Breast Cancer PatientsU01CA238475 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ELSTON, TIMOTHY C, PEROU, CHARLES M · 2019 to 2023
$3.0M
Graphical Processing Units and a Large-Memory Compute Node for Applications in Genomics, Neuroscience, and Structural BiologyS10OD028632 · OD · COLD SPRING HARBOR LABORATORY · PI SIEPEL, ADAM CHARLES · 2020 to 2020
$437k
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NCI NIH HHS P50 CA058223NCI NIH HHS U01 CA238475NIH HHS S10 OD028632
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is an aggressive form of breast cancer with poor patient outcomes, highlighting the unmet clinical need for targeted therapies and better model systems. Here, we developed and comprehensively characterized a diverse biobank of normal and breast cancer patient-derived organoids (PDO) with a focus on TNBCs. PDOs recapitulated patient tumor intrinsic properties and a subset of PDOs can be propagated for long-term culture (LT-TNBC). Single cell profiling of PDOs identified cell types and gene candidates affiliated with different aspects of cancer progression. The LT-TNBC organoids exhibit signatures of aggressive MYC-driven, basal-like breast cancers and are largely comprised of luminal progenitor (LP)-like cells. The TNBC LP-like cells are distinct from normal LPs and exhibit hyperactivation of NOTCH and MYC signaling. Overall, this study validates TNBC PDOs as robust models for understanding breast cancer biology and progression, paving the way for personalized medicine and tailored treatment options. SIGNIFICANCE: A comprehensive analysis of patient-derived organoids of TNBC provides insights into cellular heterogeneity and mechanisms of tumorigenesis at the single-cell level.

Indexed as

Triple Negative Breast NeoplasmsCell Line, TumorHumansOrganoidsPrecision MedicineProto-Oncogene Proteins c-mycSignal TransductionProto-Oncogene Proteins c-myc

Identifiers

PMID35180770
PMCPMC9135475
OpenAlexW4225576528

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.