Evidence map›Paper›PMID 35179257›Full record

ArticleJournal of clinical periodontology2022

Replication of gene polymorphisms associated with periodontitis-related traits in an elderly cohort: the Washington Heights/Inwood Community Aging Project Ancillary Study of Oral Health.

Teresa Yang, Bin Cheng, James M Noble, Christiane Reitz, Panos N Papapanou

Abstract read
In one paragraph

Article in Journal of clinical periodontology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Periodontitis and brain magnetic resonance imaging markers of Alzheimer's disease and cognitive aging.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Teresa YangDivision of Periodontics, Section of Oral, Diagnostic and Rehabilitation Sciences, College of Dental Medicine, Columbia University, New York, New York, USA.
Bin ChengDepartment of Biostatistics, Mailman School of Public Health, Columbia University, New York, New York, USA.
James M NobleTaub Institute for Research on Alzheimer's Disease and the Aging Brain, GH Sergievsky Center and Department of Neurology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York, USA.
Christiane ReitzTaub Institute for Research on Alzheimer's Disease and the Aging Brain, GH Sergievsky Center and Department of Neurology, Vagelos College of Physicians and Surgeons, Columbia University, New York, New York, USA.
Panos N PapapanouDivision of Periodontics, Section of Oral, Diagnostic and Rehabilitation Sciences, College of Dental Medicine, Columbia University, New York, New York, USA.ORCID 0000-0002-6538-3618

Funding

Research Education CoreP30AG066462 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Miguel Arce · 2020 to 2026
$30.1M
Clinical and Translational Science AwardUL1TR000040 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GINSBERG, HENRY N · 2012 to 2015
$26.2M
Epidemiological and Genetic Investigations of Blood-Based Biomarkers for Alzheimer's Disease in the Multiethnic, Washington Heights, Inwood, Columbia Aging Project (WHICAP)R01AG072474 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BRICKMAN, ADAM M, MANLY, JENNIFER JAIE · 2021 to 2025
$13.3M
Epidemiological Integration of Genetic Variants and Metabolomics Profiles in Washington Heights Columbia Aging ProjectRF1AG066107 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAYEUX, RICHARD P, MILLER, GARY W · 2020 to 2022
$11.4M
Epidemiology of Biomarkers of Risk and Progression in LOADR01AG037212 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAYEUX, RICHARD P, SCHUPF, NICOLE · 2010 to 2015
$10.1M
A Longitudinal Study of Periodontal Infections and Alzheimer's Disease: The WHICAP Ancillary Study of Oral HealthR01AG076015 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NOBLE, JAMES MCCALLUM · 2021 to 2025
$4.0M
Periodontitis Exposure and Risk of Incident DementiaR56DE022568 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NOBLE, JAMES MCCALLUM, PAPAPANOU, PANOS N · 2013 to 2014
$1.6M
A combined genetic/epigenetic approach to study periodontitis susceptibility and pathobiologyR56DE026487 · NIDCR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI PAPAPANOU, PANOS N · 2017 to 2017
$250k
NCATS NIH HHS UL1 TR000040NIA NIH HHS P30 AG066462NIA NIH HHS R01 AG037212NIA NIH HHS R01 AG072474NIA NIH HHS R01 AG076015NIA NIH HHS RF1 AG066107NIDCR NIH HHS R56 DE022568NIDCR NIH HHS R56 DE026487
6 · The paper itself

Abstract

aimWe sought to replicate findings from published genome-wide association studies (GWAS), linking specific candidate gene loci with periodontitis-related clinical/microbial traits. MATERIALS AND

methodsIn the published GWAS, a total of 2196 single nucleotide polymorphisms associated with periodontitis-related traits at a p ≤ 5 × 10

resultsUsing gene-specific p-values after linkage disequilibrium pruning, the following gene/phenotype associations replicated successfully: CLEC19A with edentulism and %teeth with pocket depth (PD) ≥4 mm; IL37, HPVC1, TRPS1, ABHD12B, LDLRAD4 (C180rF1), TGM3, and GRK5 with %teeth with PD ≥4 mm; DAB2IP with presence of PD ≥6 mm; KIAA1715(LNPK), ROBO2, RAB28, LINC01017, NELL1, LDLRAD4(C18orF1), and CRYBB2P1 with %teeth with clinical attachment level (CAL) ≥3 mm; RUNX2 and LAMA2 with %teeth with CAL ≥5 mm; and KIAA1715(LNPK) with high colonization by Aggregatibacter actinomycetemcomitans. In addition, CLEC19A, IQSEC1, and EMR1 associated with microbial abundance based on checkerboard data, LBP and NCR2 with abundance based on sequencing data, and NCR2 with microbial diversity based on sequencing data.

conclusionsSeveral gene loci identified in published GWAS as associated with periodontitis-related phenotypes replicated successfully in an elderly cohort.

Indexed as

Chronic PeriodontitisGenome-Wide Association StudyAgedAgingDNAFemaleHumansInterleukin-1MaleOral HealthPhenotypePolymorphism, Single Nucleotiderab GTP-Binding Proteinsras GTPase-Activating ProteinsRepressor ProteinsTransglutaminasesDAB2IP protein, humanDNAIL37 protein, humanInterleukin-1RAB28 protein, humanrab GTP-Binding Proteinsras GTPase-Activating ProteinsRepressor ProteinsTGM3 protein, humanTransglutaminasesTRPS1 protein, humanepidemiologygenome-wide association studymulti-ethnicperiodontal diseasereplication

Identifiers

PMID35179257
PMCPMC9012699

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.