Evidence map›Paper›PMID 35179206›Full record

ArticleThe British journal of surgery2022

Increasing frequency of gene copy number aberrations is associated with immunosuppression and predicts poor prognosis in gastric adenocarcinoma.

Arnaldo N S Silva, Yuichi Saito, Takaki Yoshikawa, Takashi Oshima, Jeremy D Hayden, Jan Oosting, Sophie Earle, Lindsay C Hewitt, Hayley L Slaney, Alex Wright and 7 more

Open access · greenAbstract read
In one paragraph

Article in The British journal of surgery, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 9 institutions in 3 countries.

Arnaldo N S SilvaDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.ORCID 0000-0003-2779-9572
Yuichi SaitoDepartment of Surgery, Teikyo University School of Medicine, Tokyo, Japan.ORCID 0000-0002-2025-9226
Takaki YoshikawaDepartment of Gastric Surgery, National Cancer Center Hospital, Tokyo, Japan.ORCID 0000-0003-1936-9484
Takashi OshimaDepartment of Gastrointestinal Surgery, Kanagawa Cancer Center Hospital, Yokohama, Japan.ORCID 0000-0001-5818-8649
Jeremy D HaydenDepartment of Upper Gastrointestinal Surgery, Institute of Oncology, Leeds Teaching Hospitals NHS Trust, Leeds, UK.ORCID 0000-0003-4470-3798
Jan OostingDepartment of Pathology, Leiden University Medical Center, Leiden, the Netherlands.ORCID 0000-0001-8894-1742
Sophie EarleDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
Lindsay C HewittDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.ORCID 0000-0001-5246-2934
Hayley L SlaneyDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
Alex WrightDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.ORCID 0000-0002-3310-1145
Imran InamDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.
Ruth E LangleyMRC Clinical Trials Unit, University College London, London, UK.ORCID 0000-0002-9706-016X
William AllumDepartment of Surgery, Royal Marsden Hospital, London, UK.ORCID 0000-0002-4540-9286
Matthew G NankivellMRC Clinical Trials Unit, University College London, London, UK.ORCID 0000-0003-3904-2729
Gordon HutchinsDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.ORCID 0000-0002-1707-4415
David CunninghamDepartment of Medicine, Royal Marsden NHS Trust, London and Sutton, UK.ORCID 0000-0001-5158-1069
Heike I GrabschDivision of Pathology and Data Analytics, Leeds Institute of Medical Research at St James's, University of Leeds, Leeds, UK.ORCID 0000-0001-9520-6228
University of Leeds · GBMRC Clinical Trials Unit at UCL · GBKanagawa Prefectural Hospital Organization · JPLeeds Teaching Hospitals NHS Trust · GBLeiden University Medical Center · NLMaastricht University · NLRoyal Marsden Hospital · GBRoyal Marsden NHS Foundation Trust · GBTokyo National Hospital · JP

Funding

Cancer Research UKMedical Research Council MC_UU_12023/20
6 · The paper itself

Abstract

backgroundPatients with Epstein-Barr virus-positive gastric cancers or those with microsatellite instability appear to have a favourable prognosis. However, the prognostic value of the chromosomal status (chromosome-stable (CS) versus chromosomal instable (CIN)) remains unclear in gastric cancer.

methodsGene copy number aberrations (CNAs) were determined in 16 CIN-associated genes in a retrospective study including test and validation cohorts of patients with gastric cancer. Patients were stratified into CS (no CNA), CINlow (1-2 CNAs) or CINhigh (3 or more CNAs). The relationship between chromosomal status, clinicopathological variables, and overall survival (OS) was analysed. The relationship between chromosomal status, p53 expression, and tumour infiltrating immune cells was also assessed and validated externally.

resultsThe test and validation cohorts included 206 and 748 patients, respectively. CINlow and CINhigh were seen in 35.0 and 15.0 per cent of patients, respectively, in the test cohort, and 48.5 and 20.7 per cent in the validation cohort. Patients with CINhigh gastric cancer had the poorest OS in the test and validation cohorts. In multivariable analysis, CINlow, CINhigh and pTNM stage III-IV (P < 0.001) were independently associated with poor OS. CIN was associated with high p53 expression and low immune cell infiltration.

conclusionCIN may be a potential new prognostic biomarker independent of pTNM stage in gastric cancer. Patients with gastric cancer demonstrating CIN appear to be immunosuppressed, which might represent one of the underlying mechanisms explaining the poor survival and may help guide future therapeutic decisions.

Indexed as

Chromosomal InstabilityGene DosageImmunocompromised HostAdenocarcinomaAgedBiomarkers, TumorFemaleGenes, p53Herpesvirus 4, HumanHumansMaleMiddle AgedMutationNeoplasm StagingPrognosisRetrospective StudiesBiomarkers, Tumor

Identifiers

PMID35179206
PMCPMC10364690
OpenAlexW4205606380

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.