Evidence map›Paper›PMID 35177839›Full record

ArticleNature chemical biology2022

Amyloid conformation-dependent disaggregation in a reconstituted yeast prion system.

Yoshiko Nakagawa, Howard C-H Shen, Yusuke Komi, Shinju Sugiyama, Takaaki Kurinomaru, Yuri Tomabechi, Elena Krayukhina, Kenji Okamoto, Takeshi Yokoyama, Mikako Shirouzu and 6 more

Abstract read
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In one paragraph

Article in Nature chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. From aggregate structure to disease trajectory: the role of the proteostasis network.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Exposed Hsp70-binding site impacts yeast Sup35 prion disaggregation and propagation.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Mapping of Prion Structures in the Yeast Rnq1.International journal of molecular sciences · 2024
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Structural Bases of Prion Variation in Yeast.International journal of molecular sciences · 2022
    Review
  18. Article
  19. Picturing protein disaggregation.Nature chemical biology · 2022
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Yoshiko NakagawaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Howard C-H ShenLaboratory for Protein Conformation Diseases, RIKEN Center for Brain Science, Saitama, Japan.
Yusuke KomiLaboratory for Protein Conformation Diseases, RIKEN Center for Brain Science, Saitama, Japan.
Shinju SugiyamaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.ORCID http://orcid.org/0000-0003-1822-0098
Takaaki KurinomaruResearch Department, U-Medico Inc., Suita, Japan.
Yuri TomabechiLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Japan.
Elena KrayukhinaResearch Department, U-Medico Inc., Suita, Japan.
Kenji OkamotoCellular Informatics Laboratory, RIKEN Cluster for Pioneering Research, Saitama, Japan.ORCID http://orcid.org/0000-0002-2649-0330
Takeshi YokoyamaLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Japan.
Mikako ShirouzuLaboratory for Protein Functional and Structural Biology, RIKEN Center for Biosystems Dynamics Research, Yokohama, Japan.ORCID http://orcid.org/0000-0002-7997-2149
Susumu UchiyamaResearch Department, U-Medico Inc., Suita, Japan.
Megumi InabaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.
Tatsuya NiwaSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan.ORCID http://orcid.org/0000-0002-1330-8974
Yasushi SakoCellular Informatics Laboratory, RIKEN Cluster for Pioneering Research, Saitama, Japan.ORCID http://orcid.org/0000-0002-5707-5455
Hideki TaguchiSchool of Life Science and Technology, Tokyo Institute of Technology, Yokohama, Japan. taguchi@bio.titech.ac.jp.ORCID http://orcid.org/0000-0002-6612-9339
Motomasa TanakaLaboratory for Protein Conformation Diseases, RIKEN Center for Brain Science, Saitama, Japan. motomasa.tanaka@riken.jp.ORCID http://orcid.org/0000-0002-2994-7703

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Disaggregation of amyloid fibrils is a fundamental biological process required for amyloid propagation. However, due to the lack of experimental systems, the molecular mechanism of how amyloid is disaggregated by cellular factors remains poorly understood. Here, we established a robust in vitro reconstituted system of yeast prion propagation and found that heat-shock protein 104 (Hsp104), Ssa1 and Sis1 chaperones are essential for efficient disaggregation of Sup35 amyloid. Real-time imaging of single-molecule fluorescence coupled with the reconstitution system revealed that amyloid disaggregation is achieved by ordered, timely binding of the chaperones to amyloid. Remarkably, we uncovered two distinct prion strain conformation-dependent modes of disaggregation, fragmentation and dissolution. We characterized distinct chaperone dynamics in each mode and found that transient, repeated binding of Hsp104 to the same site of amyloid results in fragmentation. These findings provide a physical foundation for otherwise puzzling in vivo observations and for therapeutic development for amyloid-associated neurodegenerative diseases.

Indexed as

PrionsSaccharomyces cerevisiae ProteinsAmyloidHeat-Shock ProteinsMolecular ChaperonesPeptide Termination FactorsSaccharomyces cerevisiaeAmyloidHeat-Shock ProteinsHsP104 protein, S cerevisiaeMolecular ChaperonesPeptide Termination FactorsPrionsSaccharomyces cerevisiae ProteinsSUP35 protein, S cerevisiae

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.