Evidence map›Paper›PMID 35177668›Full record

ArticleNature communications2022

Development and characterization of functional antibodies targeting NMDA receptors.

Nami Tajima, Noriko Simorowski, Remy A Yovanno, Michael C Regan, Kevin Michalski, Ricardo Gómez, Albert Y Lau, Hiro Furukawa

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

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  10. Review
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  12. Structural insights into NMDA receptor pharmacology.Biochemical Society transactions · 2023
    Review
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  15. Article
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  18. Protein quality control ofFrontiers in cellular neuroscience · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Nami Tajima *W.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA.
Noriko Simorowski *W.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA.
Remy A Yovanno *Department of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, 725 N. Wolfe Street, WBSB 706, Baltimore, MD, 21205, USA.ORCID http://orcid.org/0000-0003-3852-6684
Michael C ReganW.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA.
Kevin MichalskiW.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA.
Ricardo GómezW.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA.ORCID http://orcid.org/0000-0001-5522-195X
Albert Y LauDepartment of Biophysics and Biophysical Chemistry, Johns Hopkins University School of Medicine, 725 N. Wolfe Street, WBSB 706, Baltimore, MD, 21205, USA. alau@jhmi.edu.ORCID http://orcid.org/0000-0002-0967-7558
Hiro FurukawaW.M. Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY, 11724, USA. furukawa@cshl.edu.ORCID http://orcid.org/0000-0001-8296-8426
Cold Spring Harbor Laboratory · USJohns Hopkins University · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
Structures and reagents of NMDA receptorsR01MH085926 · NIMH · COLD SPRING HARBOR LABORATORY · PI Hiroyasu Furukawa · 2010 to 2026
$8.9M
Program of Molecular BiophysicsT32GM135131 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Karen G. Fleming · 2020 to 2026
$5.4M
Structure and Function of Hetero-Multimeric Ligand-Gated Ion ChannelsR01NS111745 · NINDS · COLD SPRING HARBOR LABORATORY · PI Hiroyasu Furukawa · 2019 to 2026
$4.2M
Breakthrough Molecular Dynamics Research via an Anton2 SupercomputerR01GM116961 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI BLOOD, PHILIP D. · 2016 to 2023
$3.0M
Structural characterization and targeting of tri-heteromeric NMDA receptors involved in neuroplasticityF32MH121061 · NIMH · COLD SPRING HARBOR LABORATORY · PI MICHALSKI, KEVIN · 2020 to 2022
$201k
NCI NIH HHS P30 CA045508NIGMS NIH HHS R01 GM116961NIGMS NIH HHS T32 GM135131NIMH NIH HHS F32 MH121061NIMH NIH HHS R01 MH085926NINDS NIH HHS R01 NS111745
6 · The paper itself

Abstract

N-methyl-D-aspartate receptors (NMDARs) are critically involved in basic brain functions and neurodegeneration as well as tumor invasiveness. Targeting specific subtypes of NMDARs with distinct activities has been considered an effective therapeutic strategy for neurological disorders and diseases. However, complete elimination of off-target effects of small chemical compounds has been challenging and thus, there is a need to explore alternative strategies for targeting NMDAR subtypes. Here we report identification of a functional antibody that specifically targets the GluN1-GluN2B NMDAR subtype and allosterically down-regulates ion channel activity as assessed by electrophysiology. Through biochemical analysis, x-ray crystallography, single-particle electron cryomicroscopy, and molecular dynamics simulations, we show that this inhibitory antibody recognizes the amino terminal domain of the GluN2B subunit and increases the population of the non-active conformational state. The current study demonstrates that antibodies may serve as specific reagents to regulate NMDAR functions for basic research and therapeutic objectives.

Indexed as

AnimalsAntibodies, MonoclonalCloning, MolecularCryoelectron MicroscopyCrystallography, X-RayImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionMolecular Dynamics SimulationOocytesRatsReceptors, N-Methyl-D-AspartateRecombinant ProteinsSf9 CellsSpodopteraXenopus laevisAntibodies, MonoclonalImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionNR2B NMDA receptorReceptors, N-Methyl-D-AspartateRecombinant Proteins

Identifiers

PMID35177668
PMCPMC8854693
OpenAlexW4213285063

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.