Evidence map›Paper›PMID 35177649›Full record

ArticleNature communications2022

Rough and smooth variants of Mycobacterium abscessus are differentially controlled by host immunity during chronic infection of adult zebrafish.

Julia Y Kam, Elinor Hortle, Elizabeth Krogman, Sherridan E Warner, Kathryn Wright, Kaiming Luo, Tina Cheng, Pradeep Manuneedhi Cholan, Kazu Kikuchi, James A Triccas and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 57 citations in OpenAlex.

  1. Review
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  4. Journal of bacteriology · 2026
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  9. The role of colony morphotype in shaping gene essentiality inProceedings of the National Academy of Sciences of the United States of America · 2025
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  10. Article
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  12. Review
  13. Insights on the Pathogenesis ofJournal of clinical medicine · 2025
    Review
  14. Article
  15. Article
  16. Toward better cures forClinical microbiology reviews · 2024
    Review
  17. The diversity of clinicalJournal of medical microbiology · 2024
    Article
  18. Review
  19. Antimicrobial and Antibiofilm Effects of Bithionol againstAntibiotics (Basel, Switzerland) · 2024
    Article
  20. Nitric oxide-releasing prodrug for the treatment of complexAntimicrobial agents and chemotherapy · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Julia Y KamTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Elinor HortleTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Elizabeth KrogmanTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Sherridan E WarnerTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Kathryn WrightTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.ORCID 0000-0001-6508-3386
Kaiming LuoTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Tina ChengTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.ORCID 0000-0003-0361-8386
Pradeep Manuneedhi CholanTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.
Kazu KikuchiDevelopmental and Stem Cell Biology Division, Victor Chang Cardiac Research Institute, Darlinghurst, NSW, Australia.
James A TriccasThe University of Sydney, Faculty of Medicine and Health & Marie Bashir Institute, Camperdown, NSW, Australia.ORCID 0000-0003-3730-2339
Warwick J BrittonTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia.ORCID 0000-0001-6721-9646
Matt D JohansenCentre National de la Recherche Scientifique UMR 9004, Institut de Recherche en Infectiologie de Montpellier (IRIM), Université de Montpellier, Montpellier, France.ORCID 0000-0001-5553-5270
Laurent KremerCentre National de la Recherche Scientifique UMR 9004, Institut de Recherche en Infectiologie de Montpellier (IRIM), Université de Montpellier, Montpellier, France.ORCID 0000-0002-6604-4458
Stefan H OehlersTuberculosis Research Program at the Centenary Institute, The University of Sydney, Camperdown, NSW, Australia. stefan_oehlers@idlabs.a-star.edu.sg.ORCID 0000-0003-0260-672X
The University of Sydney · AUAgency for Science, Technology and Research · SGInserm · FRUniversité de Montpellier · FRVictor Chang Cardiac Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prevalence of Mycobacterium abscessus infections is increasing in patients with respiratory comorbidities. After initial colonisation, M. abscessus smooth colony (S) variants can undergo an irreversible genetic switch into highly inflammatory, rough colony (R) variants, often associated with a decline in pulmonary function. Here, we use an adult zebrafish model of chronic infection with R and S variants to study M. abscessus pathogenesis in the context of fully functioning host immunity. We show that infection with an R variant causes an inflammatory immune response that drives necrotic granuloma formation through host TNF signalling, mediated by the tnfa, tnfr1 and tnfr2 gene products. T cell-dependent immunity is stronger against the R variant early in infection, and regulatory T cells associate with R variant granulomas and limit bacterial growth. In comparison, an S variant proliferates to high burdens but appears to be controlled by TNF-dependent innate immunity early during infection, resulting in delayed granuloma formation. Thus, our work demonstrates the applicability of adult zebrafish to model persistent M. abscessus infection, and illustrates differences in the immunopathogenesis induced by R and S variants during granulomatous infection.

Indexed as

AnimalsAnimals, Genetically ModifiedBacterial ProteinsDisease Models, AnimalGene Knockdown TechniquesGranulomaHost-Pathogen InteractionsHumansImmunity, InnateLymphocyte ActivationMycobacterium abscessusMycobacterium Infections, NontuberculousPersistent InfectionSignal TransductionT-Lymphocytes, RegulatoryTumor Necrosis Factor-alphaBacterial ProteinsTumor Necrosis Factor-alphaZebrafish Proteins

Identifiers

PMID35177649
PMCPMC8854618
OpenAlexW4213390841

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.