Evidence map›Paper›PMID 35176014›Full record

ArticlePloS one2022

Selection of reference genes for quantitative analysis of microRNA expression in three different types of cancer.

Yuliya A Veryaskina, Sergei E Titov, Mikhail K Ivanov, Pavel S Ruzankin, Anton S Tarasenko, Sergei P Shevchenko, Igor B Kovynev, Evgenij V Stupak, Tatiana I Pospelova, Igor F Zhimulev

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Multiple Myeloma: Genetic and Epigenetic Biomarkers with Clinical Potential.International journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Yuliya A VeryaskinaLaboratory of Gene Engineering, Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.ORCID 0000-0002-3799-9407
Sergei E TitovDepartment of the Structure and Function of Chromosomes, Laboratory of Molecular Genetics Institute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.
Mikhail K IvanovAO Vector-Best, Novosibirsk, Russia.
Pavel S RuzankinSobolev Institute of Mathematics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.ORCID 0000-0002-5262-3037
Anton S TarasenkoSobolev Institute of Mathematics, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.ORCID 0000-0003-4262-4332
Sergei P ShevchenkoNovosibirsk Municipal Clinical Hospital #1, Novosibirsk, Russia.
Igor B KovynevDepartment of Therapy, Hematology and Transfusiology, Novosibirsk State Medical University, Novosibirsk, Russia.
Evgenij V StupakDepartment of Neurosurgery, Ya.L. Tsivyan Novosibirsk Research Institute of Traumatology and Orthopedics, Novosibirsk, Russia.
Tatiana I PospelovaDepartment of Therapy, Hematology and Transfusiology, Novosibirsk State Medical University, Novosibirsk, Russia.
Igor F ZhimulevDepartment of the Structure and Function of Chromosomes, Laboratory of Molecular Genetics Institute of Molecular and Cellular Biology, Siberian Branch of Russian Academy of Sciences, Novosibirsk, Russia.
Russian Academy of Sciences · RUNovosibirsk State Medical University · RUNovosibirsk State University · RUCity Clinical Hospital No. 2 · RUNovosibirsk Scientific Research Institute of Traumatology and Orthopedics. Ya.L. Tsivyan · RUState Research Center of Virology and Biotechnology VECTOR · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) are promising biomarkers in cancer research. Quantitative PCR (qPCR), also known as real-time PCR, is the most frequently used technique for measuring miRNA expression levels. The use of this technique, however, requires that expression data be normalized against reference genes. The problem is that a universal internal control for quantitative analysis of miRNA expression by qPCR has yet to be known. The aim of this work was to find the miRNAs with stable expression in the thyroid gland, brain and bone marrow according to NanoString nCounter miRNA quantification data. As a results, the most stably expressed miRNAs were as follows: miR-361-3p, -151a-3p and -29b-3p in the thyroid gland; miR-15a-5p, -194-5p and -532-5p in the brain; miR-140-5p, -148b-3p and -362-5p in bone marrow; and miR-423-5p, -28-5p and -532-5p, no matter what tissue type. These miRNAs represent promising reference genes for miRNA quantification by qPCR.

Indexed as

Gene Expression Regulation, NeoplasticBiomarkers, TumorBone Marrow NeoplasmsBrain NeoplasmsCase-Control StudiesGene Expression ProfilingHumansMicroRNAsPrognosisReference StandardsThyroid NeoplasmsBiomarkers, TumorMicroRNAs

Identifiers

PMID35176014
PMCPMC8853544
OpenAlexW4213094572

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.