Evidence map›Paper›PMID 35175353›Full record

ArticleFEMS microbiology reviews2022

Contemporary diagnostics for medically relevant fastidious microorganisms belonging to the genera Anaplasma,Bartonella,Coxiella,OrientiaandRickettsia.

Diana J Vaca, Gerhard Dobler, Silke F Fischer, Christian Keller, Maik Konrad, Friederike D von Loewenich, Sylvain Orenga, Siddhesh U Sapre, Alex van Belkum, Volkhard A J Kempf

Open access · greenAbstract read
In one paragraph

Article in FEMS microbiology reviews, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 4 pooled it
8.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 4 syntheses or guidelines pooled it, 38 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Diana J VacaInstitute for Medical Microbiology and Infection Control, University Hospital, Goethe University, Paul-Ehrlich-Str. 40, D-60596 Frankfurt am Main, Germany.ORCID 0000-0002-2299-8364
Gerhard DoblerDepartment of Virology and Rickettsiology, Bundeswehr Institute of Microbiology, Neuherbergstrasse 11, D-80937 Munich, Germany.
Silke F FischerNational Consulting Laboratory for Coxiella burnetii, State Health Office Baden-Württemberg, Nordbahnhofstraße 135, D-70191 Stuttgart, Germany.
Christian KellerInstitute of Virology, Philipps University Marburg, Hans-Meerwein-Strasse 2, D-35043 Marburg, Germany.
Maik KonradNational Consulting Laboratory for Coxiella burnetii, State Health Office Baden-Württemberg, Nordbahnhofstraße 135, D-70191 Stuttgart, Germany.
Friederike D von LoewenichInstitute of Virology, University of Mainz, Obere Zahlbacherstrasse 67, D-55131 Mainz, Germany.
Sylvain OrengaMicrobiology R&D, bioMérieux, 3 route de Port Michaud, 38 390 La BALME-les-Grottes, France.
Siddhesh U SapreInstitute of Virology, Philipps University Marburg, Hans-Meerwein-Strasse 2, D-35043 Marburg, Germany.
Alex van BelkumOpen Innovation and Partnerships, bioMérieux, 3 route de Port Michaud, 38 390 La BALME-les-Grottes, France.ORCID 0000-0001-8545-5108
Volkhard A J KempfInstitute for Medical Microbiology and Infection Control, University Hospital, Goethe University, Paul-Ehrlich-Str. 40, D-60596 Frankfurt am Main, Germany.ORCID 0000-0002-3321-7551
bioMérieux (France) · FRGoethe University Frankfurt · DEPhilipps University of Marburg · DEInstitut für Mikrobiologie der BundeswehrJohannes Gutenberg University Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many of the human infectious pathogens-especially the zoonotic or vector-borne bacteria-are fastidious organisms that are difficult to cultivate because of their strong adaption to the infected host culminating in their near-complete physiological dependence on this environment. These bacterial species exhibit reduced multiplication rates once they are removed from their optimal ecological niche. This fact complicates the laboratory diagnosis of the disease and hinders the detection and further characterization of the underlying organisms, e.g. at the level of their resistance to antibiotics due to their slow growth. Here, we describe the current state of microbiological diagnostics for five genera of human pathogens with a fastidious laboratory lifestyle. For Anaplasma spp., Bartonella spp., Coxiella burnetii, Orientia spp. and Rickettsia spp., we will summarize the existing diagnostic protocols, the specific limitations for implementation of novel diagnostic approaches and the need for further optimization or expansion of the diagnostic armamentarium. We will reflect upon the diagnostic opportunities provided by new technologies including mass spectrometry and next-generation nucleic acid sequencing. Finally, we will review the (im)possibilities of rapidly developing new in vitro diagnostic tools for diseases of which the causative agents are fastidiously growing and therefore hard to detect.

Indexed as

BartonellaCoxiella burnetiiRickettsiaAnaplasmaCoxiellaHumansin vitro diagnosticsmass spectrometryPCR diagnosticsserologyslow-growing bacteriawhole-genome sequencing

Identifiers

PMID35175353
PMCPMC9300619
OpenAlexW4213030340

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.