Evidence map›Paper›PMID 35174859›Full record

ArticleProtein engineering, design & selection : PEDS2022

Immortalization and functional screening of natively paired human T cell receptor repertoires.

Ahmed S Fahad, Cheng-Yu Chung, Sheila N Lopez Acevedo, Nicoleen Boyle, Bharat Madan, Matias F Gutiérrez-González, Rodrigo Matus-Nicodemos, Amy D Laflin, Rukmini R Ladi, John Zhou and 7 more

Open access · greenAbstract read
In one paragraph

Article in Protein engineering, design & selection : PEDS, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Ahmed S FahadDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.ORCID 0000-0002-5088-9333
Cheng-Yu ChungDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Sheila N Lopez AcevedoDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Nicoleen BoyleDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Bharat MadanDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Matias F Gutiérrez-GonzálezDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Rodrigo Matus-NicodemosVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Amy D LaflinDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Rukmini R LadiDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
John ZhouDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Jacy WolfeDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.
Sian Llewellyn-LaceyDivision of Infection and Immunity, Cardiff University School of Medicine, University Hospital of Wales, Cardiff CF14 4XN, UK.
Richard A KoupVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Daniel C DouekVaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Henry H BalfourDepartment of Laboratory Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
David A PriceDivision of Infection and Immunity, Cardiff University School of Medicine, University Hospital of Wales, Cardiff CF14 4XN, UK.
Brandon J DeKoskyDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS 66044, USA.ORCID 0000-0001-6406-0836
University of Kansas · USNational Institutes of Health · USUniversity Hospital of Wales · GBUniversity of Minnesota Medical Center · US

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Douglas E Wright · 2012 to 2026
$63.0M
Understanding the mechanobiology of stem cells in a microengineered 3D cardiac tissue environment with cardiomyopathyP20GM103638 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI LUNTE, SUSAN M · 2012 to 2021
$22.1M
T Cell Immune Responses To HIV And Other PathogensZIAAI005033 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2009 to 2025
$11.4M
Innate and Adaptive Immune Responses in SARS-CoV-2 infection (COVID-19)ZIAAI005151 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2020 to 2025
$6.8M
InflammationZIAAI005031 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI DOUEK, DANIEL CESAR · 2009 to 2024
$5.9M
Comprehensive analysis of human adaptive immune receptors to elucidate correlates of Epstein-Barr virus disease suppressionDP5OD023118 · OD · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES · 2016 to 2022
$2.2M
Rapid antibody screening systems to identify and engineer antiviral protectionR21AI166396 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI DEKOSKY, BRANDON JAMES · 2022 to 2023
$850k
T cell responses shared among triple negative breast cancer patientsR21CA230487 · NCI · UNIVERSITY OF COLORADO DENVER · PI SLANSKY, JILL E · 2018 to 2019
$377k
NCI NIH HHS R21 CA230487NIAID NIH HHS R21 AI166396NIGMS NIH HHS P20 GM103418NIGMS NIH HHS P20 GM103638NIH HHS DP5 OD023118Wellcome Trust
6 · The paper itself

Abstract

Functional analyses of the T cell receptor (TCR) landscape can reveal critical information about protection from disease and molecular responses to vaccines. However, it has proven difficult to combine advanced next-generation sequencing technologies with methods to decode the peptide-major histocompatibility complex (pMHC) specificity of individual TCRs. We developed a new high-throughput approach to enable repertoire-scale functional evaluations of natively paired TCRs. In particular, we leveraged the immortalized nature of physically linked TCRα:β amplicon libraries to analyze binding against multiple recombinant pMHCs on a repertoire scale, and to exemplify the utility of this approach, we also performed affinity-based functional mapping in conjunction with quantitative next-generation sequencing to track antigen-specific TCRs. These data successfully validated a new immortalization and screening platform to facilitate detailed molecular analyses of disease-relevant antigen interactions with human TCRs.

Indexed as

Receptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaAntigensHumansPeptidesAntigensPeptidesReceptors, Antigen, T-CellReceptors, Antigen, T-Cell, alpha-betaaffinity-based screeninghigh-throughput TCRα:β sequencinglibrary immortalizationT cell receptor (TCR)

Identifiers

PMID35174859
PMCPMC9005053
OpenAlexW4206664627

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.