Evidence map›Paper›PMID 35173349›Full record

ArticleNature structural & molecular biology2022

Structural basis for DNA targeting by the Tn7 transposon.

Yao Shen, Josue Gomez-Blanco, Michael T Petassi, Joseph E Peters, Joaquin Ortega, Alba Guarné

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 52 citations in OpenAlex.

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  11. Overview and Prospects of DNA Sequence Visualization.International journal of molecular sciences · 2025
    Review
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  19. Article
  20. Annotation and Comparative Genomics of Prokaryotic Transposable Elements.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Yao ShenDepartment of Biochemistry, McGill University, Montreal, Quebec, Canada.ORCID http://orcid.org/0000-0002-0278-0771
Josue Gomez-BlancoDepartment of Biochemistry, McGill University, Montreal, Quebec, Canada.
Michael T PetassiDepartment of Microbiology, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0002-4934-8636
Joseph E PetersDepartment of Microbiology, Cornell University, Ithaca, NY, USA.ORCID http://orcid.org/0000-0001-8309-3297
Joaquin OrtegaCentre de Recherche and Biologie Structurale, McGill University, Montreal, Quebec, Canada.ORCID http://orcid.org/0000-0002-9423-3344
Alba GuarnéDepartment of Biochemistry, McGill University, Montreal, Quebec, Canada. alba.guarne@mcgill.ca.ORCID http://orcid.org/0000-0003-4906-9132
McGill University · CACornell University · US

Funding

CRISPR/Cas-directed transposition in Tn7-like elementsR01GM129118 · NIGMS · CORNELL UNIVERSITY · PI PETERS, JOSEPH E · 2019 to 2022
$1.2M
CIHR PJT-155941NIGMS NIH HHS R01 GM129118
6 · The paper itself

Abstract

Tn7 transposable elements are unique for their highly specific, and sometimes programmable, target-site selection mechanisms and precise insertions. All the elements in the Tn7 family utilize an AAA+ adaptor (TnsC) to coordinate target-site selection with transpososome assembly and to prevent insertions at sites already containing a Tn7 element. Owing to its multiple functions, TnsC is considered the linchpin in the Tn7 element. Here we present the high-resolution cryo-EM structure of TnsC bound to DNA using a gain-of-function variant of the protein and a DNA substrate that together recapitulate the recruitment to a specific DNA target site. TnsC forms an asymmetric ring on target DNA that segregates target-site selection and interaction with the paired-end complex to opposite faces of the ring. Unlike most AAA+ ATPases, TnsC uses a DNA distortion to find the target site but does not remodel DNA to activate transposition. By recognizing pre-distorted substrates, TnsC creates a built-in regulatory mechanism where ATP hydrolysis abolishes ring formation proximal to an existing element. This work unveils how Tn7 and Tn7-like elements determine the strict spacing between the target and integration sites.

Indexed as

Binding SitesCrystallography, X-RayDNA, BacterialDNA-Binding ProteinsDNA Transposable ElementsEscherichia coliEscherichia coli ProteinsModels, MolecularProtein Interaction Domains and MotifsProtein Structure, QuaternarySubstrate SpecificityTransposasesDNA, BacterialDNA-Binding ProteinsDNA Transposable ElementsEscherichia coli ProteinsTnsC protein, E coliTransposases

Identifiers

PMID35173349
PMCPMC12747246
OpenAlexW4213072947

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.