ArticleMicrobiology spectrum2022
Effects of Waterlogging on Soybean Rhizosphere Bacterial Community Using V4, LoopSeq, and PacBio 16S rRNA Sequence.
Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 45 citations in OpenAlex.
- Rhizosphere Bacterial Communities of Two Coastal Halophytes Under Salinity-Flooding Stress.Plants (Basel, Switzerland) · 2026Article
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- Metagenomic sequencing reveals structural and functional differentiation of the rhizosphere bacterial communities associated with available potassium inFrontiers in microbiology · 2026Article
- Root morphogenetic responses to waterlogging stress in plants: from structural reconfiguration to molecular regulatory mechanisms.Frontiers in plant science · 2026Review
- Metagenomic sequencing reveals structural and functional differentiation of rhizosphere bacterial communities driven by nitrogen and potassium deficiency associated with root rot ofFrontiers in microbiology · 2026Article
- Key Challenges in Plant Microbiome Research in the Next Decade.Microorganisms · 2025Review
- Investigation on the aerobic methanotrophic community and the dominant taxon Methylomarinum in seagrass ecosystem.Environmental microbiome · 2025Article
- Diversity and interactions of rhizobacteria determine multinutrient traits in tomato host plants under nitrogen and water disturbances.Horticulture research · 2025Article
- Diversity of the Obligate Gut Bacteria Indicates Host-Symbiont Coevolution at the Population Level in the Plataspid StinkbugEcology and evolution · 2024Article
- Utility analyses of AVITI sequencing chemistry.BMC genomics · 2024Article
- Fine-scale characterization of the soybean rhizosphere microbiome via synthetic long reads and avidity sequencing.Environmental microbiome · 2024Article
- Utility Analyses of AVITI Sequencing Chemistry.bioRxiv : the preprint server for biology · 2024Article
- Uncovering the effect of waterlogging stress on plant microbiome and disease development: current knowledge and future perspectives.Frontiers in plant science · 2024Review
- Article
- Complex bacterial diversity of Guaymas Basin hydrothermal sediments revealed by synthetic long-read sequencing (LoopSeq).Frontiers in microbiology · 2024Article
- Peanut-based Rotation Stabilized Diazotrophic Communities and Increased Subsequent Wheat Yield.Microbial ecology · 2023Article
- Silicon Application for the Modulation of Rhizosphere Soil Bacterial Community Structures and Metabolite Profiles in Peanut underInternational journal of molecular sciences · 2023Article
- Microbiome structure variation and soybean's defense responses during flooding stress and elevated COFrontiers in plant science · 2023Article
- Plant genotype influence the structure of cereal seed fungal microbiome.Frontiers in microbiology · 2022Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Waterlogging causes a significant reduction in soil oxygen levels, which in turn negatively affects soil nutrient use efficiency and crop yields. Rhizosphere microbes can help plants to better use nutrients and thus better adapt to this stress, while it is not clear how the plant-associated microbes respond to waterlogging stress. There are also few reports on whether this response is influenced by different sequencing methods and by different soils. In this study, using partial 16S rRNA sequencing targeting the V4 region and two full-length 16S rRNA sequencing approaches targeting the V1 to V9 regions, the effects of waterlogging on soybean rhizosphere bacterial structure in two types of soil were examined. Our results showed that, compared with the partial 16S sequencing, full-length sequencing, both LoopSeq and Pacific Bioscience (PacBio) 16S sequencing, had a higher resolution. On both types of soil, all the sequencing methods showed that waterlogging significantly affected the bacterial community structure of the soybean rhizosphere and increased the relative abundance of
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