Evidence map›Paper›PMID 35171023›Full record

ArticleMicrobiology spectrum2022

Pufferfish (Tetraodon cutcutia) Sampled from a Freshwater River Serves as an Intermediate Reservoir of a Sucrose Nonfermenting Variant of Vibrio cholerae PS-4.

Lipika Das, Sushanta Deb, Eiji Arakawa, Shinji Yamasaki, Subrata K Das

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Lipika DasDepartment of Biotechnology, Institute of Life Sciencesgrid.418782.0, Nalco Square, Bhubaneswar, India.
Sushanta DebDepartment of Biotechnology, Institute of Life Sciencesgrid.418782.0, Nalco Square, Bhubaneswar, India.
Eiji ArakawaDepartment of Bacteriology I, National Institute of Infectious Diseases, Tokyo, Japan.
Shinji YamasakiDepartment of Veterinary Science, Graduate School of Life and Environmental Sciences, Osaka Prefecture University, Osaka, Japan.
Subrata K DasDepartment of Biotechnology, Institute of Life Sciencesgrid.418782.0, Nalco Square, Bhubaneswar, India.ORCID 0000-0002-7280-5751
Regional Centre for Biotechnology · INInstitute of Life Sciences · INNational Institute of Infectious Diseases · JPOsaka Prefecture University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe the genomic characteristics of Vibrio cholerae strain PS-4 that is unable to ferment sucrose on a thiosulfate citrate bile salt sucrose (TCBS) agar medium. This bacterium was isolated from the skin mucus of a freshwater pufferfish. The genome of strain PS-4 was sequenced to understand the sucrose nonfermenting phenotype. The gene encoding the sucrose-specific phosphotransferase system IIB (sucR) was absent, resulting in the defective sucrose fermenting phenotype. In contrast, genes encoding the glucose-specific transport system IIB (ptsG) and fructose-specific transport system IIB (fruA) showed acid production while growing with respective sugars. The overall genome relatedness indices (OGRI), such as

Indexed as

AnimalsBacterial ProteinsCholeraDisease ReservoirsEndotoxinsFermentationFructoseGenome, BacterialGlucoseHumansPhosphotransferasesRiversSkinSucroseTetraodontiformesVibrio choleraeBacterial ProteinsEndotoxinsFructoseGlucosePhosphotransferasesSucrosezonula occludens toxin, Vibrio choleraephylogenomic analysispufferfishserotypingsucrose nonfermentingVibrio choleraevirulence genes

Identifiers

PMID35171023
PMCPMC8849079
OpenAlexW4213295588

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.