Evidence map›Paper›PMID 35169802›Full record

ArticlebioRxiv : the preprint server for biology2022

Detection of SARS-CoV-2 Omicron variant (B.1.1.529) infection of white-tailed deer.

Kurt J Vandegrift, Michele Yon, Meera Surendran-Nair, Abhinay Gontu, Saranya Amirthalingam, Ruth H Nissly, Nicole Levine, Tod Stuber, Anthony J DeNicola, Jason R Boulanger and 13 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors.

Kurt J VandegriftThe Center for Infectious Disease Dynamics, Department of Biology and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA.
Michele YonAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.
Meera Surendran-NairAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.
Abhinay GontuAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.
Saranya AmirthalingamAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.
Ruth H NisslyAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.
Nicole LevineDepartment of Animal Science and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA.
Tod StuberNational Veterinary Services Laboratories, Veterinary Services, U.S. Department of Agriculture, Ames, Iowa, USA.
Anthony J DeNicolaWhite Buffalo, Inc., 6B Kings Hwy, Chester, CT 06412, USA.
Jason R BoulangerWhite Buffalo, Inc., 6B Kings Hwy, Chester, CT 06412, USA.
Nathan KotschwarWhite Buffalo, Inc., 6B Kings Hwy, Chester, CT 06412, USA.
Sarah Grimké AucoinCity of New York Parks & Recreation, 1234 5 Avenue, 5 Floor, New York, NY 10029, USA.
Richard SimonCity of New York Parks & Recreation, 1234 5 Avenue, 5 Floor, New York, NY 10029, USA.
Katrina ToalCity of New York Parks & Recreation, 1234 5 Avenue, 5 Floor, New York, NY 10029, USA.
Randall J OlsenLaboratory of Molecular and Translational Human Infectious Disease Research, Center for Infectious Diseases, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, TX 77030, USA.
James J DavisUniversity of Chicago Consortium for Advanced Science and Engineering, University of Chicago and Division of Data Science and Learning, Argonne National Laboratory, Argonne, Illinois, USA.
Dashzeveg BoldDepartment of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS, USA.
Natasha N GaudreaultDepartment of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS, USA.
Juergen A RichtDepartment of Diagnostic Medicine/Pathobiology, Kansas State University, Manhattan, KS, USA.
James M MusserLaboratory of Molecular and Translational Human Infectious Disease Research, Center for Infectious Diseases, Department of Pathology and Genomic Medicine, Houston Methodist Research Institute and Houston Methodist Hospital, Houston, TX 77030, USA.
Peter J HudsonThe Center for Infectious Disease Dynamics, Department of Biology and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA.
Vivek KapurDepartment of Animal Science and Huck Institutes of the Life Sciences, The Pennsylvania State University, University Park, PA, 16802, USA.
Suresh V KuchipudiAnimal Diagnostic Laboratory, Department of Veterinary and Biomedical Sciences and Huck Institutes of the Life Sciences, The Pennsylvania State University, PA,16802, USA.

Funding

BIOINFORMATICS RESOURCE CENTERS FOR INFECTIOUS DISEASES: SARS-CoV-2 ACTIVITIES75N93019C00076 · NIAID · UNIVERSITY OF CHICAGO · PI STEVENS, RICK · 2019 to 2023
$32.6M
Sex-specific effects of obestity on Influenza A virus infection and immunityP20GM130448 · NIGMS · KANSAS STATE UNIVERSITY · PI REVATHI GOVIND · 2020 to 2026
$15.8M
Infection and prevalence of a new segmented flavivirus in the United StatesR21AI156406 · NIAID · RESEARCH INST NATIONWIDE CHILDREN'S HOSP · PI KAPOOR, AMIT · 2021 to 2022
$440k
NIAID NIH HHS 75N93019C00076NIAID NIH HHS HHSN272201400006CNIAID NIH HHS R21 AI156406NIGMS NIH HHS P20 GM130448
6 · The paper itself

Abstract

White-tailed deer ( KEY

findingsThese studies provide strong evidence of infection of free-living white-tailed deer with the SARS-CoV-2 B.1.1.529 Omicron variant of concern on Staten Island, New York, and highlight an urgent need for investigations on human-to-animal-to-human spillovers/spillbacks as well as on better defining the expanding host-range of SARS-CoV-2 in non-human animals and the environment.

Identifiers

PMID35169802
PMCPMC8845426

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.