Evidence map›Paper›PMID 35169167›Full record

ArticleScientific reports2022

Deep-learning-assisted Fourier transform imaging spectroscopy for hyperspectral fluorescence imaging.

Cory Juntunen, Isabel M Woller, Andrew R Abramczyk, Yongjin Sung

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Cory JuntunenCollege of Engineering and Applied Science, University of Wisconsin-Milwaukee, Milwaukee, USA.
Isabel M WollerCollege of Health Sciences, University of Wisconsin-Milwaukee, Milwaukee, USA.
Andrew R AbramczykCollege of Engineering and Applied Science, University of Wisconsin-Milwaukee, Milwaukee, USA.
Yongjin SungCollege of Engineering and Applied Science, University of Wisconsin-Milwaukee, Milwaukee, USA. ysung4@uwm.edu.
University of Wisconsin–Milwaukee · US

Funding

3-D Imaging Flow CytometryR21GM135848 · NIGMS · UNIVERSITY OF WISCONSIN MILWAUKEE · PI SUNG, YONGJIN · 2019 to 2020
$351k
NIGMS NIH HHS R21 GM135848
6 · The paper itself

Abstract

Hyperspectral fluorescence imaging is widely used when multiple fluorescent probes with close emission peaks are required. In particular, Fourier transform imaging spectroscopy (FTIS) provides unrivaled spectral resolution; however, the imaging throughput is very low due to the amount of interferogram sampling required. In this work, we apply deep learning to FTIS and show that the interferogram sampling can be drastically reduced by an order of magnitude without noticeable degradation in the image quality. For the demonstration, we use bovine pulmonary artery endothelial cells stained with three fluorescent dyes and 10 types of fluorescent beads with close emission peaks. Further, we show that the deep learning approach is more robust to the translation stage error and environmental vibrations. Thereby, the He-Ne correction, which is typically required for FTIS, can be bypassed, thus reducing the cost, size, and complexity of the FTIS system. Finally, we construct neural network models using Hyperband, an automatic hyperparameter selection algorithm, and compare the performance with our manually-optimized model.

Indexed as

Deep LearningEndothelial CellsFourier AnalysisNeural Networks, ComputerAnimalsCattleFluorescent DyesImage Processing, Computer-AssistedPulmonary ArterySpectrometry, FluorescenceFluorescent Dyes

Identifiers

PMID35169167
PMCPMC8847646
OpenAlexW4213033023

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.