Evidence map›Paper›PMID 35168561›Full record

ArticleBMC genomics2022

Genetic effect of an InDel in the promoter region of the NUDT15 and its effect on myoblast proliferation in chickens.

Chengjie Wei, Yufang Niu, Bingjie Chen, Panpan Qin, Yanxing Wang, Dan Hou, Tong Li, Ruiting Li, Chunxiu Wang, Huadong Yin and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A novel 22-bp InDel withinAnimal biotechnology · 2024
    Article
  5. Regulatory Effects of 198-bp Structural Variants in theInternational journal of molecular sciences · 2024
    Article
  6. Article
  7. Article
  8. Animals : an open access journal from MDPI · 2022
    Article
  9. Copy Number Variations in theAnimals : an open access journal from MDPI · 2022
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Chengjie Wei *College of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Yufang Niu *College of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Bingjie ChenCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Panpan QinCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Yanxing WangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Dan HouCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Tong LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Ruiting LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Chunxiu WangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Huadong YinFarm Animal genetic resources exploration and innovation key laboratory of sichuan province, sichuan agricultural university, Chengdu, China.
Ruili HanCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Huifen XuCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Yadong TianCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Xiaojun LiuCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Xiangtao KangCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China.
Zhuanjian LiCollege of Animal Science and Technology, Henan Agricultural University, Zhengzhou, 450046, China. lizhuanjian@163.com.
Henan Agricultural University · CNSichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMolecular breeding accelerates the speed of animal breeding. Screening molecular markers that can affect economic traits through genome-wide association studies (GWAS) can provide a theoretical basis for molecular breeding. At present, a large number of molecular markers have been screened in poultry research, but few reports on how molecular markers affect economic traits exist. It is particularly important to reveal the action mechanisms of molecular markers, which can provide more accurate information for molecular breeding.

resultsThe aim of this study was to investigate the relationships between two indels (NUDT15-indel-2777 and NUDT15-indel-1673) in the promoter region of NUDT15 and growth and carcass traits in chickens and to explore the regulatory mechanism of NUDT15. Significant differences were found in genotype and allele frequencies among commercial broilers, commercial laying hens and dual-purpose chickens. The results of association analyses showed that these two indel loci could significantly affect growth traits, such as body weight, and carcass traits. Tissue expression profiling at E12 showed that the expression of NUDT15 was significantly higher in skeletal muscle, and time-expression profiling of leg muscle showed that the expression of NUDT15 in myoblasts was significantly higher in the E10 and E12 proliferation stages than in other stages. Promoter activity analysis showed that pro-1673-I and pro-1673-D significantly inhibited promoter activity, and the promoter activity of pro-1673-D was significantly lower than that of pro-1673-I. In addition, when NUDT15 was overexpressed or underwent interference in chicken primary myoblasts (CPMs), NUDT15 could inhibit the proliferation of CPMs.

conclusionThe results suggest that the studied indels in the promoter region of NUDT15 may regulate the proliferation of CPMs by affecting NUDT15 expression, ultimately affecting the growth and carcass traits of chickens. These indel polymorphisms may be used together as molecular markers for improving economic traits in chickens.

Indexed as

ChickensGenome-Wide Association StudyAnimalsCell ProliferationFemaleGenotypeINDEL MutationMyoblastsPromoter Regions, GeneticCell proliferationIndelMuscleNUDT15Primary myoblastPromoter

Identifiers

PMID35168561
PMCPMC8848950
OpenAlexW4213006735

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.