Evidence map›Paper›PMID 35168327›Full record

ArticleJournal of proteome research2022

Glycosphingolipid-Glycan Signatures of Acute Myeloid Leukemia Cell Lines Reflect Hematopoietic Differentiation.

Di Wang, Tao Zhang, Katarina Madunić, Antonius A de Waard, Constantin Blöchl, Oleg A Mayboroda, Marieke Griffioen, Robbert M Spaapen, Christian G Huber, Guinevere S M Lageveen-Kammeijer and 1 more

Abstract read
In one paragraph

Article in Journal of proteome research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
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  7. ComprehensiveAnalytical chemistry · 2024
    Article
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  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Di WangCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0002-4687-9239
Tao ZhangCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0003-0427-9953
Katarina MadunićCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0002-9310-4110
Antonius A de WaardDepartment of Immunopathology, Sanquin Research, 1066 CX Amsterdam, The Netherlands.
Constantin BlöchlCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.
Oleg A MayborodaCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0001-8739-9875
Marieke GriffioenDepartment of Hematology, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.
Robbert M SpaapenDepartment of Immunopathology, Sanquin Research, 1066 CX Amsterdam, The Netherlands.
Christian G HuberDepartment of Biosciences, University of Salzburg, Hellbrunnerstrasse 34, 5020 Salzburg, Austria.ORCID 0000-0001-8358-1880
Guinevere S M Lageveen-KammeijerCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0001-7670-1151
Manfred WuhrerCenter for Proteomics and Metabolomics, Leiden University Medical Center, Postbus 9600, 2300 RC Leiden, The Netherlands.ORCID 0000-0002-0814-4995

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Aberrant expression of certain glycosphingolipids (GSLs) is associated with the differentiation of acute myeloid leukemia (AML) cells. However, the expression patterns of GSLs in AML are still poorly explored because of their complexity, the presence of multiple isomeric structures, and tedious analytical procedures. In this study, we performed an in-depth GSL glycan analysis of 19 AML cell lines using porous graphitized carbon liquid chromatography-mass spectrometry revealing strikingly different GSL glycan profiles between the various AML cell lines. The cell lines of the M6 subtype showed a high expression of gangliosides with α2,3-sialylation and Neu5Gc, while the M2 and M5 subtypes were characterized by high expression of (neo)lacto-series glycans and Lewis A/X antigens. Integrated analysis of glycomics and available transcriptomics data revealed the association of GSL glycan abundances with the transcriptomics expression of certain glycosyltransferases (GTs) and transcription factors (TFs). In addition, correlations were found between specific GTs and TFs. Our data reveal TFs

Indexed as

GlycosphingolipidsLeukemia, Myeloid, AcuteCell DifferentiationCell LineGlycomicsHumansPolysaccharidesGlycosphingolipidsPolysaccharidesacute myeloid leukemiaglycosphingolipidsglycosyltransferaseshematopoietic transcription factorsmass spectrometryporous graphitized carbon liquid chromatography

Identifiers

PMID35168327
PMCPMC8981326

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.