Evidence map›Paper›PMID 35166830›Full record

ArticlePlant physiology2022

CONSTITUTIVE PHOTOMORPHOGENIC 1 promotes seed germination by destabilizing RGA-LIKE 2 in Arabidopsis.

Byoung-Doo Lee, Yehyun Yim, Esther Cañibano, Suk-Hwan Kim, Marta García-León, Vicente Rubio, Sandra Fonseca, Nam-Chon Paek

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Byoung-Doo LeeDepartment of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, South Korea.ORCID 0000-0001-7215-2781
Yehyun YimDepartment of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, South Korea.ORCID 0000-0003-4566-644X
Esther CañibanoDepartamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.ORCID 0000-0003-0334-3095
Suk-Hwan KimDepartment of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, South Korea.ORCID 0000-0002-8496-256X
Marta García-LeónDepartamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.
Vicente RubioDepartamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.ORCID 0000-0002-8800-2400
Sandra FonsecaDepartamento de Genética Molecular de Plantas, Centro Nacional de Biotecnología (CNB-CSIC), Madrid 28049, Spain.ORCID 0000-0002-2021-4482
Nam-Chon PaekDepartment of Agriculture, Forestry and Bioresources, Plant Genomics and Breeding Institute, Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul 08826, South Korea.ORCID 0000-0002-9827-2287
Centro Nacional de Biotecnología · ESSeoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Under favorable moisture, temperature, and light conditions, gibberellin (GA) biosynthesis is induced and triggers seed germination. A major mechanism by which GA promotes seed germination is by promoting the degradation of the DELLA protein RGA-LIKE 2 (RGL2), a major repressor of germination in Arabidopsis (Arabidopsis thaliana) seeds. Analysis of seed germination phenotypes of constitutive photomorphogenic 1 (cop1) mutants and complemented COP1-OX/cop1-4 lines in response to GA and paclobutrazol (PAC) suggested a positive role for COP1 in seed germination and a relation with GA signaling. cop1-4 mutant seeds showed PAC hypersensitivity, but transformation with a COP1 overexpression construct rendered them PAC insensitive, with a phenotype similar to that of rgl2 mutant (rgl2-SK54) seeds. Furthermore, cop1-4 rgl2-SK54 double mutants showed a PAC-insensitive germination phenotype like that of rgl2-SK54, identifying COP1 as an upstream negative regulator of RGL2. COP1 interacted directly with RGL2, and in vivo this interaction was strongly enhanced by SUPPRESSOR OF PHYA-105 1. COP1 directly ubiquitinated RGL2 to promote its degradation. Moreover, GA stabilized COP1 with consequent RGL2 destabilization. By uncovering this COP1-RGL2 regulatory module, we reveal a mechanism whereby COP1 positively regulates seed germination and controls the expression of germination-promoting genes.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantGerminationGibberellinsRepressor ProteinsSeedsTranscription FactorsUbiquitin-Protein LigasesArabidopsis ProteinsAT2G32950 protein, ArabidopsisGibberellinsRepressor ProteinsRGA protein, ArabidopsisTranscription FactorsUbiquitin-Protein Ligases

Identifiers

PMID35166830
PMCPMC9237706
OpenAlexW4211134076

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.