Evidence map›Paper›PMID 35166829›Full record

ArticlePlant physiology2022

Aureochromes maintain polyunsaturated fatty acid content in Nannochloropsis oceanica.

Eric Poliner, Andrea W U Busch, Linsey Newton, Young Uk Kim, Rachel Clark, Sofía C Gonzalez-Martinez, Byeong-Ryool Jeong, Beronda L Montgomery, Eva M Farré

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Eric PolinerDepartment of Plant Biology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-9740-9034
Andrea W U BuschMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA.
Linsey NewtonDepartment of Plant Biology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0002-7149-4752
Young Uk KimDepartment of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34141, Korea.
Rachel ClarkDepartment of Plant Biology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0001-6799-9021
Sofía C Gonzalez-MartinezDepartment of Plant Biology, Michigan State University, East Lansing, Michigan, USA.
Byeong-Ryool JeongSingle-Cell Center, CAS Key Laboratory of Biofuels and Shandon Key Laboratory of Energy Genetics, Shandong Institute of Energy Research, Qingdao Institute of BioEnergy and Bioprocess Technology (QiBEBT), Chinese Academy of Sciences, Qingdao, Shandong 266101, China.ORCID 0000-0003-0642-1650
Beronda L MontgomeryMSU-DOE Plant Research Laboratory, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-2953-0956
Eva M FarréDepartment of Plant Biology, Michigan State University, East Lansing, Michigan, USA.ORCID 0000-0003-1566-7572
Michigan State University · USChinese Academy of Sciences · CNKorea Advanced Institute of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nannochloropsis oceanica, like other stramenopile microalgae, is rich in long-chain polyunsaturated fatty acids (LC-PUFAs) such as eicosapentaenoic acid (EPA). We observed that fatty acid desaturases (FADs) involved in LC-PUFA biosynthesis were among the strongest blue light-induced genes in N. oceanica CCMP1779. Blue light was also necessary for maintaining LC-PUFA levels in CCMP1779 cells, and growth under red light led to a reduction in EPA content. Aureochromes are stramenopile-specific proteins that contain a light-oxygen-voltage (LOV)-sensing domain that associates with a flavin mononucleotide and is able to sense blue light. These proteins also contain a basic leucine zipper DNA-binding motif and can act as blue light-regulated transcription factors by associating with an E-box like motif, which we found enriched in the promoters of blue light-induced genes. We demonstrated that, in vitro, two CCMP1779 aureochromes were able to absorb blue light. Moreover, the loss or reduction of the expression of any of the three aureochrome genes led to a decrease in the blue light-specific induction of several FADs in CCMP1779. EPA content was also significantly reduced in NoAUREO2 and NoAUREO4 mutants. Taken together, our results indicate that aureochromes mediate blue light-dependent regulation of LC-PUFA content in N. oceanica CCMP1779 cells.

Indexed as

MicroalgaeStramenopilesEicosapentaenoic AcidFatty Acid DesaturasesFatty AcidsFatty Acids, UnsaturatedLightEicosapentaenoic AcidFatty Acid DesaturasesFatty AcidsFatty Acids, Unsaturated

Identifiers

PMID35166829
PMCPMC9157131
OpenAlexW4211032254

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.